RNA id: TCONS_00028338


Basic Information

Item Value
RNA id TCONS_00028338
length 688
lncRNA type retained_intron
GC content 0.35
exon number 2
gene id XLOC_014259
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42227400 ~ 42236185 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAATGACTACTTCATTGATacagaaatttagttttgagagttgaactaaggattttgagcaagagactggcttttgcaggtaatccatggtATTTTGctatttgtatgtgttgttttgagaaatgcacttactgttttgcaaaatttcaattctgatctgagaaatgtaccaaagtgactgaggaaaaactgtaaaattaaaatgtaagaaTCCTCAACGAGCAAATCAAGTGTATTCAACATATTCAGCATTGAacaccattgtgttataaatgggattgtttattgtaattataattttaacttcagcccaccaccctcaatcaagtttagtttttggcccttcataagaaaatgtttgggcacccctgagcTAGATTTTAGTTATATAGCTAGATATTAGACATAGCCAGAAACAGTGTGATCTgattttgccatgaaatagctaGATATTTCAATATGATATGGCAATGAATTCGAAATTCTCTCTctcataataaaaaacaaaagctttGATTGTGAATATAATTCTCTgtccatattttttattatagagtATTTGGAGCAGCTCTTCTGAGCGATGAGAAGACAGcagTTGCCGTGACAAAGGCGATGACAGCACCATGTTGGCAGCTGGAGGAGTTTGTGGTGGCTAAAGAGTGCAGTGTATGCGAGGGTTTGCAATTG

Function

GO:

id name namespace
GO:0000281 mitotic cytokinesis biological_process
GO:0005813 centrosome cellular_component
GO:0005819 spindle cellular_component
GO:0030496 midbody cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-674 Predicted to be involved in mitotic cytokinesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and midbody. Predicted to colocalize with centrosome and spindle. Orthologous to human JTB (jumping translocation breakpoint).

Ensembl:

ensembl_id ENSDART00000151410

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030033 lncRNA upstream 90007 42127923 ~ 42140654 (+) True XLOC_014255
TCONS_00030031 lncRNA upstream 389460 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA upstream 389460 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00030030 lncRNA upstream 992133 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00030029 lncRNA upstream 1039142 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00028346 lncRNA downstream 274334 42505974 ~ 42516134 (+) False XLOC_014264
TCONS_00030034 lncRNA downstream 274335 42505975 ~ 42508177 (+) False XLOC_014264
TCONS_00030035 lncRNA downstream 274347 42505987 ~ 42508177 (+) True XLOC_014264
TCONS_00029731 lncRNA downstream 286937 42518577 ~ 42547204 (+) True XLOC_014265
TCONS_00028347 lncRNA downstream 329316 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00028334 mRNA upstream 10227 42219165 ~ 42220434 (+) True XLOC_014258
TCONS_00028332 mRNA upstream 11840 42142381 ~ 42218821 (+) True XLOC_014256
TCONS_00028328 mRNA upstream 110962 42071033 ~ 42119699 (+) False XLOC_014254
TCONS_00028327 mRNA upstream 110962 42071033 ~ 42119699 (+) False XLOC_014254
TCONS_00028329 mRNA upstream 112069 42071814 ~ 42118592 (+) False XLOC_014254
TCONS_00028340 mRNA downstream 96783 42328423 ~ 42341815 (+) False XLOC_014260
TCONS_00028341 mRNA downstream 104883 42336523 ~ 42340885 (+) True XLOC_014260
TCONS_00028343 mRNA downstream 200985 42432625 ~ 42456001 (+) True XLOC_014262
TCONS_00028344 mRNA downstream 237418 42469058 ~ 42485064 (+) False XLOC_014263
TCONS_00028345 mRNA downstream 238756 42470396 ~ 42485002 (+) True XLOC_014263
TCONS_00028333 other upstream 41557 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 1272045 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 1885924 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 2103897 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 2175270 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028342 other downstream 105677 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 501048 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 683779 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 846104 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028380 other downstream 849285 43080925 ~ 43081060 (+) True XLOC_014280

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU100533 True 203 lncRNA 0.36 2 NC_053118.1 23143942 ~ 23144165 (+)
bowfin (Amia calva) TU100533 False 1570 TUCP 0.34 8 CM030129.1 29494617 ~ 29503451 (+)