RNA id: TCONS_00028346


Basic Information

Item Value
RNA id TCONS_00028346
length 651
lncRNA type lincRNA
GC content 0.54
exon number 2
gene id XLOC_014264
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42505974 ~ 42516134 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTAATGTCCGACATTAACGTCAAACAAACAAACGCCCAAACACTCGACGGGATCCACGCCGTTTACCGCCAAAAAGCTTTTTGGCCCGAGTTCGACACATCATCCACAAAATCCCACCAGGAGTTTGAAACCCATCTGTAAAGCAGCTTACAAAAGcagGTGTGTTTCATTGGGTGATGTCCTTCATGGTTTACCCCCGTGATGAGGCTTTAGAGTGGATGATGCAGGATGAAATCGTGCTGACTACAACACTAAATTGGTGATCGATTTGGAGACGCTGCGAGGGGAACATGCTCAACTCCTCATAACCATTCTGGACTGCAGTCAACCAGCCGGAGCGCAGGAGAAATCCACACTGCTGCTGAAGGACCTGGAGGAGGACATTGAACTGGGCCTGGGAAAAGCACAGCGGAAACAGGAGCACAGGAGGAATCCAGACTGCTGCTGGAGGACCTGGAGGAGGACATTGAGCTGGGCCTGGGAGAAGCACAGCGGAAACAGGAGCACAGGAGGAGTCCAGACTGCTGCTGGAGGACCTGGAGGAGGACATTGAGCTCGGCCTGGGAGAAGCACAGCGGGAACAGGAGCACAGGAGGAGTCCAGACTGCTGCTGGAGGACCTGGAGGAGGACATTGAGCTGGGCCTGGGAG

Function

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0032835 glomerulus development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0048318 axial mesoderm development biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0048321 axial mesodermal cell differentiation biological_process
GO:0048322 axial mesodermal cell fate commitment biological_process
GO:0048327 axial mesodermal cell fate specification biological_process
GO:0014028 notochord formation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007418 ventral midline development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0021508 floor plate formation biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165747

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028338 lncRNA upstream 274334 42230661 ~ 42231640 (+) False XLOC_014259
TCONS_00030033 lncRNA upstream 365320 42127923 ~ 42140654 (+) True XLOC_014255
TCONS_00030031 lncRNA upstream 664773 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA upstream 664773 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00030030 lncRNA upstream 1267446 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00029731 lncRNA downstream 2443 42518577 ~ 42547204 (+) True XLOC_014265
TCONS_00028347 lncRNA downstream 44822 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00030036 lncRNA downstream 49224 42565358 ~ 42573127 (+) True XLOC_014267
TCONS_00028356 lncRNA downstream 245812 42761946 ~ 42764766 (+) False XLOC_014270
TCONS_00028357 lncRNA downstream 250573 42766707 ~ 42773579 (+) False XLOC_014270
TCONS_00028344 mRNA upstream 20910 42469058 ~ 42485064 (+) False XLOC_014263
TCONS_00028345 mRNA upstream 20972 42470396 ~ 42485002 (+) True XLOC_014263
TCONS_00028343 mRNA upstream 49973 42432625 ~ 42456001 (+) True XLOC_014262
TCONS_00028340 mRNA upstream 164159 42328423 ~ 42341815 (+) False XLOC_014260
TCONS_00028341 mRNA upstream 165089 42336523 ~ 42340885 (+) True XLOC_014260
TCONS_00028348 mRNA downstream 92998 42609132 ~ 42617723 (+) True XLOC_014268
TCONS_00028349 mRNA downstream 144024 42660158 ~ 42682947 (+) True XLOC_014269
TCONS_00028350 mRNA downstream 177721 42693855 ~ 42802298 (+) False XLOC_014270
TCONS_00028351 mRNA downstream 178077 42694211 ~ 42744977 (+) False XLOC_014270
TCONS_00028352 mRNA downstream 200408 42716542 ~ 42802298 (+) False XLOC_014270
TCONS_00028342 other upstream 168543 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 316870 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 1547358 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 2161237 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 2379210 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028353 other downstream 216554 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 399285 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 561610 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028380 other downstream 564791 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028401 other downstream 923267 43439401 ~ 43451947 (+) False XLOC_014288

Expression Profile

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