RNA id: TCONS_00030033


Basic Information

Item Value
RNA id TCONS_00030033
length 668
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_014255
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42127923 ~ 42140654 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACAAACATCACTCTGACAGGTGTCGGTCTATGAAGAGAACAAAAAGTAAATTGCCATTGGATTAGGCTGCTGGACTCTGAACCGGAATAGCAGTAGTGCTGAATTATATGAAGGATAATCCTGTGTTTTCCCTGTGCTCTGATTTTTCAAATGAATGCAGGCTTGGAGCAGGAGAGACTTCCTcaaaaaagctttaaaagttttacattaaaaacctTTGACTGTAGGTCGCATAGCTGCTGATCAGTGGCTGATTGTGTGAAATGGAAGCAAAGCGACACCGGAAGTCTCAGATAAGTTACAAATGGCAAGTAAATATATAGCTGATATATACGATAAGTAAAATTCAACTCTATAACAGGTTTGAATTATTAAGCAGAAGAACATAGGCTACTTTTTGTACAGGAAAAATAAATGGCGTGACTTAAATTTGAAGTCTTGCACATTTACATCATGTAAAATATCTGTGTTGAAAATTCAGTGGCTTCGCCAAATTGTAATCAAACATTTTAGTTTGCTAATTTTTCTAGTAAGTAAAGAAACAGGAATGATAAAGAGTTTAAGCCAATGTAGTCTAATTttgttttgtggtgtttattAGCAGAGTCAAAGCCCTGTGTCGTGAACTGACTCACTGAGGTTTCCacaaaggttattattattaaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030031 lncRNA upstream 286722 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA upstream 286722 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00030030 lncRNA upstream 889395 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00030029 lncRNA upstream 936404 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00030028 lncRNA upstream 1390939 40692428 ~ 40736984 (+) True XLOC_014234
TCONS_00028338 lncRNA downstream 90007 42230661 ~ 42231640 (+) False XLOC_014259
TCONS_00028346 lncRNA downstream 365320 42505974 ~ 42516134 (+) False XLOC_014264
TCONS_00030034 lncRNA downstream 365321 42505975 ~ 42508177 (+) False XLOC_014264
TCONS_00030035 lncRNA downstream 365333 42505987 ~ 42508177 (+) True XLOC_014264
TCONS_00029731 lncRNA downstream 377923 42518577 ~ 42547204 (+) True XLOC_014265
TCONS_00028328 mRNA upstream 8224 42071033 ~ 42119699 (+) False XLOC_014254
TCONS_00028327 mRNA upstream 8224 42071033 ~ 42119699 (+) False XLOC_014254
TCONS_00028329 mRNA upstream 9331 42071814 ~ 42118592 (+) False XLOC_014254
TCONS_00028330 mRNA upstream 9331 42071880 ~ 42118592 (+) False XLOC_014254
TCONS_00028331 mRNA upstream 10292 42086862 ~ 42117631 (+) True XLOC_014254
TCONS_00028332 mRNA downstream 1727 42142381 ~ 42218821 (+) True XLOC_014256
TCONS_00028334 mRNA downstream 78511 42219165 ~ 42220434 (+) True XLOC_014258
TCONS_00028335 mRNA downstream 86746 42227400 ~ 42235993 (+) False XLOC_014259
TCONS_00028336 mRNA downstream 86746 42227400 ~ 42236185 (+) False XLOC_014259
TCONS_00028337 mRNA downstream 88364 42229018 ~ 42234645 (+) False XLOC_014259
TCONS_00028303 other upstream 1169307 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 1783186 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 2001159 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 2072532 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 2252976 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028333 other downstream 48336 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 196663 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 592034 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 774765 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 937090 43077744 ~ 43077879 (+) True XLOC_014279