Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028351 |
| length | 1155 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 11 |
| gene id | XLOC_014270 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 42693855 ~ 42802298 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0034453 | microtubule anchoring | biological_process |
| GO:0090307 | mitotic spindle assembly | biological_process |
| GO:0031023 | microtubule organizing center organization | biological_process |
| GO:0007020 | microtubule nucleation | biological_process |
| GO:0007030 | Golgi organization | biological_process |
| GO:0010458 | exit from mitosis | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0007052 | mitotic spindle organization | biological_process |
| GO:0040001 | establishment of mitotic spindle localization | biological_process |
| GO:0031110 | regulation of microtubule polymerization or depolymerization | biological_process |
| GO:0051301 | cell division | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0000775 | chromosome, centromeric region | cellular_component |
| GO:0000776 | kinetochore | cellular_component |
| GO:0000777 | condensed chromosome kinetochore | cellular_component |
| GO:0032587 | ruffle membrane | cellular_component |
| GO:0072686 | mitotic spindle | cellular_component |
| GO:0042995 | cell projection | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005802 | trans-Golgi network | cellular_component |
| GO:0005815 | microtubule organizing center | cellular_component |
| GO:0045180 | basal cortex | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005876 | spindle microtubule | cellular_component |
| GO:0005881 | cytoplasmic microtubule | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005694 | chromosome | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0051010 | microtubule plus-end binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2343 | Predicted to enable microtubule plus-end binding activity. Predicted to be involved in several processes, including exit from mitosis; microtubule cytoskeleton organization; and regulation of microtubule polymerization or depolymerization. Predicted to act upstream of or within cell division. Predicted to be located in microtubule; ruffle membrane; and trans-Golgi network. Predicted to be active in basal cortex; kinetochore; and microtubule cytoskeleton. Orthologous to human CLASP2 (cytoplasmic linker associated protein 2). |
| ensembl_id | ENSDART00000180153 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00028347 | lncRNA | upstream | 90922 | 42560956 ~ 42603289 (+) | True | XLOC_014266 |
| TCONS_00030036 | lncRNA | upstream | 121084 | 42565358 ~ 42573127 (+) | True | XLOC_014267 |
| TCONS_00029731 | lncRNA | upstream | 147007 | 42518577 ~ 42547204 (+) | True | XLOC_014265 |
| TCONS_00028346 | lncRNA | upstream | 178077 | 42505974 ~ 42516134 (+) | False | XLOC_014264 |
| TCONS_00028356 | lncRNA | downstream | 16969 | 42761946 ~ 42764766 (+) | False | XLOC_014270 |
| TCONS_00028357 | lncRNA | downstream | 21730 | 42766707 ~ 42773579 (+) | False | XLOC_014270 |
| TCONS_00028359 | lncRNA | downstream | 48388 | 42793365 ~ 42798406 (+) | True | XLOC_014270 |
| TCONS_00028372 | lncRNA | downstream | 279710 | 43024687 ~ 43027483 (+) | True | XLOC_014277 |
| TCONS_00028377 | lncRNA | downstream | 327716 | 43072693 ~ 43079678 (+) | False | XLOC_014278 |
| TCONS_00028349 | mRNA | upstream | 11264 | 42660158 ~ 42682947 (+) | True | XLOC_014269 |
| TCONS_00028348 | mRNA | upstream | 76488 | 42609132 ~ 42617723 (+) | True | XLOC_014268 |
| TCONS_00028344 | mRNA | upstream | 209147 | 42469058 ~ 42485064 (+) | False | XLOC_014263 |
| TCONS_00028345 | mRNA | upstream | 209209 | 42470396 ~ 42485002 (+) | True | XLOC_014263 |
| TCONS_00028343 | mRNA | upstream | 238210 | 42432625 ~ 42456001 (+) | True | XLOC_014262 |
| TCONS_00028355 | mRNA | downstream | 9905 | 42754882 ~ 42773691 (+) | False | XLOC_014270 |
| TCONS_00028358 | mRNA | downstream | 25064 | 42770041 ~ 42790503 (+) | False | XLOC_014270 |
| TCONS_00028360 | mRNA | downstream | 61835 | 42806812 ~ 42841889 (+) | False | XLOC_014271 |
| TCONS_00028361 | mRNA | downstream | 61837 | 42806814 ~ 42837490 (+) | True | XLOC_014271 |
| TCONS_00028362 | mRNA | downstream | 102329 | 42847306 ~ 42875185 (+) | True | XLOC_014272 |
| TCONS_00028342 | other | upstream | 356780 | 42337317 ~ 42337431 (+) | True | XLOC_014261 |
| TCONS_00028333 | other | upstream | 505107 | 42188990 ~ 42189104 (+) | True | XLOC_014257 |
| TCONS_00028303 | other | upstream | 1735595 | 40958500 ~ 40958616 (+) | True | XLOC_014238 |
| TCONS_00028293 | other | upstream | 2349474 | 40337554 ~ 40344737 (+) | False | XLOC_014231 |
| TCONS_00028276 | other | upstream | 2567447 | 40116262 ~ 40126764 (+) | False | XLOC_014226 |
| TCONS_00028365 | other | downstream | 170442 | 42915419 ~ 42915541 (+) | True | XLOC_014274 |
| TCONS_00028379 | other | downstream | 332767 | 43077744 ~ 43077879 (+) | True | XLOC_014279 |
| TCONS_00028380 | other | downstream | 335948 | 43080925 ~ 43081060 (+) | True | XLOC_014280 |
| TCONS_00028401 | other | downstream | 694424 | 43439401 ~ 43451947 (+) | False | XLOC_014288 |
| TCONS_00028411 | other | downstream | 920414 | 43665391 ~ 43665511 (+) | True | XLOC_014295 |
