RNA id: TCONS_00028355


Basic Information

Item Value
RNA id TCONS_00028355
length 832
RNA type mRNA
GC content 0.58
exon number 6
gene id XLOC_014270
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42693855 ~ 42802298 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCTGCGGGCTCAAAATCTTCTGGATCTCCAGCCTCGCTGCAGCGCTCCCGCAGTGATGTGGATGTCAACGCTGCCGCCGGTGCTAAAGCCAGACACAGTGGCCAGGCTGGAGGAGCCGGCAGAGTCACCACAGGCCTGACCCCTGGATCATACGCTTCTCTCgggCGGCTACGGACTAAGCAGACTTTATCCACAGCTTCCAGTGTGGGCAGCAGTCAGGTAGACTCCAGAGGCCGGACCAGATCCAAGATGGCGTCCCAGTCACAACCGGGTTCTCGGTCAGGATCCCCAGGCCGGGTTTTGGCCAGCACGGCTCTGAGCACGCTCAGTACAGGAGCTCAGCGTGTGAGTGCAGCTCCAGGCTCTCACCGCCGCAGCCGCATCCCACGCAGTCAAGGCTGCAGTCGAGACTCCAGCCCCACACGCCTGTCTGTCGCGCCTTCAAACATCAGCCACATCTACAACGGATCAAAAGGAGGTTCTGGGTTGGGTATGTCTCAGTCCAGTCGTCTGTCATCTTCAGTTAGTGCCATGAGAGTCTTGAACACCGGATCTGACGTGGAGGAAGCCCTGGCAGATGCTCTgAAGAAACCTGCTCGGCGGCGGTACGACACGTATGGGATGTATTCAGATGATGATGCTAATAGCGACGCCTCTAGCGCGTGTTCTGAGCGCTCGTACAGCTCCAGAAATGGCAGCATCCCAACGTATATGCGGCAGACGGAGGACGTGGCTGAAGTGCTCAATCGCTGTGCCTCCGCCAACTGGTCCGAGAGGAAAGAGGGGCTGATGGGATTGCAGGCGTTGCTGAAAAACCATCGAACTCTTAG

Function

GO:

id name namespace
GO:0034453 microtubule anchoring biological_process
GO:0090307 mitotic spindle assembly biological_process
GO:0031023 microtubule organizing center organization biological_process
GO:0007020 microtubule nucleation biological_process
GO:0007030 Golgi organization biological_process
GO:0010458 exit from mitosis biological_process
GO:0007049 cell cycle biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0040001 establishment of mitotic spindle localization biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0051301 cell division biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0032587 ruffle membrane cellular_component
GO:0072686 mitotic spindle cellular_component
GO:0042995 cell projection cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0045180 basal cortex cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005694 chromosome cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051010 microtubule plus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2343 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in several processes, including exit from mitosis; microtubule cytoskeleton organization; and regulation of microtubule polymerization or depolymerization. Predicted to act upstream of or within cell division. Predicted to be located in microtubule; ruffle membrane; and trans-Golgi network. Predicted to be active in basal cortex; kinetochore; and microtubule cytoskeleton. Orthologous to human CLASP2 (cytoplasmic linker associated protein 2).

Ensembl:

ensembl_id ENSDART00000133711

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028347 lncRNA upstream 151593 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00030036 lncRNA upstream 181755 42565358 ~ 42573127 (+) True XLOC_014267
TCONS_00029731 lncRNA upstream 207678 42518577 ~ 42547204 (+) True XLOC_014265
TCONS_00028346 lncRNA upstream 238748 42505974 ~ 42516134 (+) False XLOC_014264
TCONS_00028359 lncRNA downstream 19674 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00028372 lncRNA downstream 250996 43024687 ~ 43027483 (+) True XLOC_014277
TCONS_00028377 lncRNA downstream 299002 43072693 ~ 43079678 (+) False XLOC_014278
TCONS_00030037 lncRNA downstream 299002 43072693 ~ 43079838 (+) False XLOC_014278
TCONS_00028378 lncRNA downstream 300952 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00028351 mRNA upstream 9905 42694211 ~ 42744977 (+) False XLOC_014270
TCONS_00028349 mRNA upstream 71935 42660158 ~ 42682947 (+) True XLOC_014269
TCONS_00028348 mRNA upstream 137159 42609132 ~ 42617723 (+) True XLOC_014268
TCONS_00028344 mRNA upstream 269818 42469058 ~ 42485064 (+) False XLOC_014263
TCONS_00028345 mRNA upstream 269880 42470396 ~ 42485002 (+) True XLOC_014263
TCONS_00028360 mRNA downstream 33121 42806812 ~ 42841889 (+) False XLOC_014271
TCONS_00028361 mRNA downstream 33123 42806814 ~ 42837490 (+) True XLOC_014271
TCONS_00028362 mRNA downstream 73615 42847306 ~ 42875185 (+) True XLOC_014272
TCONS_00028363 mRNA downstream 112722 42886413 ~ 42917226 (+) False XLOC_014273
TCONS_00028364 mRNA downstream 124548 42898239 ~ 42916773 (+) True XLOC_014273
TCONS_00028353 other upstream 19597 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 417451 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 565778 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 1796266 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 2410145 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028365 other downstream 141728 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 304053 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028380 other downstream 307234 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028401 other downstream 665710 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 891700 43665391 ~ 43665511 (+) True XLOC_014295

Expression Profile

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