RNA id: TCONS_00028321


Basic Information

Item Value
RNA id TCONS_00028321
length 2169
RNA type mRNA
GC content 0.54
exon number 14
gene id XLOC_014249
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41551335 ~ 41597464 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGCCACGGATTTTACTGACCTTCCTGACGTTTATTGGTTCATgTTTGTGTAATGGATCAGAGCTGGCTTTCCTCATAGAGCCCAGTGATGTGATCGCTGTCCGGGACAGGCCTTTGATGCTTGACTGCAGGGTGGAAGGCGAAGGTCCCATCACAGTGACGTGGCACAAAAACGGAGCACCGCTACTCGCTGGCATTGGCAGTCGGGTTAAGATCCTGTCCAACGGCACGCTCCTGATCCGCAGCTTCCAAAAGAGACGGGATGGCGATGCAACCGATGCTGGAGAATATTACTGCGCTGCACAGAACCACTACGGCATGCTGGTCAGCCGTAAGGCCCGTGTGCAGCTCGCATCTCTTCCCAAATTTCACACTCACCCGGAGTCAATGTCAGTAGATGATGGAGGCGTTGCACGTTTCCAGTGTCAGGTCAATGGTATTCCTGAAGCCAGCATCACTTGGGAGAAGGACCATGTTGTGCTTGGTACATCTGATGACAGGTACACACTTCTCCCAATGGGCATCCTGCAGATTACAGGAGTCAAAAAAGCAGATGCTGGCATCTACCGCTGCGTTGCCAGCAATATCGCCAACACCCGCTACAGCCACGAAGCCCATCTGAACGTAACCGGAGGAGTTCCTCGCACCTATAAGGAGCCAGTCATCCTGTCCGGCCCACAAAACCTCACCATCACTGTCCATCAGACCGCCATCCTGGAGTGCATCGCCACCGGGAACCCTCGTCCCATTGTGTCTTGGAGTAGACTTGATGGCAGATCCATTGGAGTGGAGGGCATTCAAGTGCTTGGCACTGGTAACCTGATGATCTCGGATGTCTCTCTTCAACACTCTGGAGTGTATGTGTGCGCTGCCAACCGGCCTGGCACAAGGATGAGGCGTACCGCACTGGGCAGGCTGGTAGTCCAAGCTCCTCCAGAGTTCATTCAGTGGCCGCAGTCCGTGTCGAAGCCGGCAGGGGGCAGTGCGGTGTTCACATGCGTCGCTCAGGGGGTCCCGGAGCCGCACATTATATGGCTGAAGAACGGCAAGATTCTCACGCCTGGTGATAATGTCAAACTCACCAACAACAACAgTACTCTTGCTGTGACTCGTATCACCTCGGAGGATGAAGCCATATATCAGTGCATAGCTGAAAACACTGCGGGCACGAATCAGGCCAGCGCTCGTCTGGCAGTGTCTCTGGCCAAAGAGCTCCCCGACTCTCCTCAGGGCCTGAAGGCCACGGCTCTGTCCAAAACATCCCTGCAGCTCTCCTGGACACAGCCGCCGGCTGAAGTCACAGACGGCATCATTGGATATGTGCTGCACATACGCAAATATGGCGAGTCTGAGAGTAAAGAACTACAGGAGGCCGTGAGCAAGACAACATTTCAGCATGACCTCACAAACTTGGAACCTGCGACCACCTACTCCATCTACCTGAAGGCCTATTCTCCGCTGGGGGCCAGTCAACAGTCCAGTACTGTGGTCTCCACAACACTAGGGGGCGtGCCCAGTCCACCTACATTTTTCACCAAGGCTATAAACGCCACAGCAGTCCAGGTCCTGTGGGAGCTTCCCAATAAGCCTGGAAAAGCAGAGGGTTTCCGTCTGACCTACCGCAGGGTCCCCCATGGAGAGATGCAGGGGCCCATTCAGTTGCCTTGCCATGTTAACGCTCACATCATCTCACATCTCGACGCCGGTGCTGTGTATGAAGTCAAACTGGTGGCCTACAATGGGAATGGAGAGAGCGACTGTTCGAAGAAGCTCGTGTCACTGGCTGAGGACGGCACAAGTGCTAAAACCAGAGCAGGAGAGGAAGCTCAGTGTAACTGCAGGGGTGTGGAGGGCTCGGTGAGCAGCATTGTGGTTGGCATCCACATCGGCATGGCCTGCATCATTTTCTGTGTGCTCTTCCTCATGTTCGGATATCGGCGCAGTTTTCTCTGTAGGAAGGGGACCCAGGACAGCTGGTCTGTGCCACAGGGTGAAGATGGAGGGCATCGAGTTCAGGGCAACGGACTCCCTAAACAGGGAATAACACAACCTGCTCAAGGCATTGAATTAGTTCCTCAGGGTCATAATAAAGATCAGACCCAGTGTCAGGTTCTTATTGAGCAGCACCCATCCAATCTGCCAGGCACGGGCACAGGCACTGGCTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-153 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000112364

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030030 lncRNA upstream 313015 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00030029 lncRNA upstream 360024 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00030028 lncRNA upstream 814559 40692428 ~ 40736984 (+) True XLOC_014234
TCONS_00028294 lncRNA upstream 1210914 40337564 ~ 40340629 (+) True XLOC_014231
TCONS_00030026 lncRNA upstream 1218449 40328712 ~ 40333094 (+) True XLOC_014230
TCONS_00030031 lncRNA downstream 240287 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA downstream 240607 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00030033 lncRNA downstream 530459 42127923 ~ 42140654 (+) True XLOC_014255
TCONS_00028338 lncRNA downstream 633197 42230661 ~ 42231640 (+) False XLOC_014259
TCONS_00028346 lncRNA downstream 908510 42505974 ~ 42516134 (+) False XLOC_014264
TCONS_00028319 mRNA upstream 10971 41520987 ~ 41540572 (+) True XLOC_014248
TCONS_00028318 mRNA upstream 27152 41520892 ~ 41524391 (+) False XLOC_014248
TCONS_00028316 mRNA upstream 37734 41509956 ~ 41513809 (+) False XLOC_014247
TCONS_00028317 mRNA upstream 37741 41510000 ~ 41513802 (+) True XLOC_014247
TCONS_00028315 mRNA upstream 51898 41479990 ~ 41499645 (+) True XLOC_014246
TCONS_00028322 mRNA downstream 104196 41701660 ~ 41724246 (+) True XLOC_014250
TCONS_00028323 mRNA downstream 171671 41769135 ~ 41829721 (+) True XLOC_014251
TCONS_00028324 mRNA downstream 449963 42047427 ~ 42064436 (+) False XLOC_014253
TCONS_00028325 mRNA downstream 449963 42047427 ~ 42068989 (+) False XLOC_014253
TCONS_00028326 mRNA downstream 464235 42061699 ~ 42068986 (+) True XLOC_014253
TCONS_00028303 other upstream 592927 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 1206806 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 1424779 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 1496152 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 1676596 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028333 other downstream 591526 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 739853 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 1135224 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 1317955 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 1480280 43077744 ~ 43077879 (+) True XLOC_014279

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_02152519_02171110.mRNA True 2452 mRNA 0.52 14 CI01000054 2152389 ~ 2171317 (-)