XLOC_014232 (hepacam2)


Basic Information

Item Value
gene id XLOC_014232
gene name hepacam2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40350468 ~ 40374428 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028295
CAAATACTGTCACCAGTTCCCTTTTCTTGTCACACAGCTTCTACAGATTATATAGCTCAAATGGAATGTGTTGAAGTCACCATGATCCTGCTGATATGCAGCTTATTTGTCATAATATCTGGCTCCGACCCTGAATACATTCGGCTTCAGCCCACGCAGCATGGCAGAAAAGGGGAATCTATGAATCTCAGAGTCGAGACTCTCTTTAATGTCAAGGATGTGCCGTTCCAGGGATCCTGGTTCAAGACCAGGCCCAAAGTCACGCCTTTGGTCACTTTCCAGTTTTCTCCCAGTACAACCAGTTCCATTCCCAATCTGCTAGTGAAGAACATCACAATGCAGGAACTGCCCGATGTTTCTCTGAGGTTTGTGAATCTGGATGAAGACACAAAGGGGGAATACGAGCTGCAGGTCAACATCGTTTTTGATGAAAACGCTCCTCCAGTTTCTGTCACTAAAACAGTGACGGTTACAGTGAGCGTACCGGTCTCCACTCCTGTTATCAGTAAAACCCCAGAATCTGAACTTGTTGAAGACCGGGACAACGTAACGCTGACTTGTTCTGCTCTACACGGGACGGAGATTCGGTACAAATGGCTAAAGGACAACATGTTGGTTAGTCCAAGCGACCGGCACACATTCTCTGAAGATAACGGGACGCTTTTCATAAACCCTGTTAGGAAAGAAGACATGGGCCAGTACATTTGCGAGGCTCATAACCAGATCAGCAGTGAACAAAGCCAACAGACTGATCTCAGTGTATTCTATGGGCCTTATAACCTGGCAGTAAATTGTGACCAAGCTCTGAAAACGGAAGGGGTTTTTACGGTAAACCCAGGGGAACTGGCGTTTTTTGAGTGTAATGCAGACTCGAATCCTCCAAACACCTTCCTTTGGATCTCAAAAACAGGTAATGGGACTGAGATTGTCATGACGGGGCCAAGGTTGGAGGTGAAGACGTACGAGTTGCCACAGGGGAAGGAGTTCTTGTGCAGAGCTTTCAATAACGCCACGAAGAAGCAGGACGAGACCAAGTTCACACTGGTCGTGGCCAGACTGCACAGAGGAAAAGCGAAATTTCTCCAGGAAGGGAGCGTGATGTCTCCGCTGGCGTTAGTTACGGTCACTTCAGTGGTCATCATCGTGTGTATGATGTTTGTGCTGCTGAGGAAGAGCTGCCATCCCAAAAGAGTTGTGAAGAATTTCTGCAGGCGGACGATGACGGAGCAGAGAGGACTTCACCGCTCTGGTCATGAAAGTGCAACCGAGGACTTTGGAATCTATGAATTTGTCTCTGTGGGTGGGAAAATGGAGTCAacacagGCATCCTGCAGGTCTTTGACACGGCTGGATTCAGTCAGAGATTTGCATACCACCATCTATGATGTCATCAGACATGTGCCTGAAACGCCAACACTGAGTCTTTTGAAATGAGAGCCGGATGCTCACGTGGGCTCAGATGAAAGATTCTTCTCGCTACAGTCACACATTCAAGCACttcttttgttttacaattattccTTTTTGTACTTTTGCAAATCTTAAACTCCTGAAAATCGTACAACTTGTGCTGCGCACTGATGTTTATATGATCTTTAAAATATACAAGAGgattatcagattttttttctgtagcaAAATGCTTTGAGTATTTATATATGAATGCAGCCGCCTTCTAACGTTGTTGTTTTTGTCccattttgaatgtaaatatgatgtttgtgttttgtacttgtaaaaaaaaagaatgtatttTTTGCACACTGCAGTGTATTGCCATATTTCTCATTACATCTTAAATGTCCCGAACCCTTTACATTTACACAGCAGCTTTTGAATGTAAAGCAGACATCTTCTGTCCGTTCTGTTGTTTATGTCTGGCACCTGCTCatatgttaacaaagatgaatgatCCAcaactgcaaaataaaataaaggtttgtaAAAATA

Function

symbol description
hepacam2 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism; mucus secreting cell; and pancreatic bud. Orthologous to human HEPACAM2 (HEPACAM family member 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-135 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism; mucus secreting cell; and pancreatic bud. Orthologous to human HEPACAM2 (HEPACAM family member 2).

Ensembl:

ensembl_id ENSDARG00000061365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028295 True 1950 mRNA 0.44 9 40350468 40374428

Neighbor

gene id symbol gene type direction distance location
XLOC_014231 fam133b coding upstream 2525 40335271 ~ 40347943 (+)
XLOC_014230 NA coding upstream 17374 40328712 ~ 40333094 (+)
XLOC_014229 cdk6 coding upstream 21919 40248697 ~ 40328549 (+)
XLOC_014227 BX510986.1 coding upstream 138276 40171960 ~ 40212192 (+)
XLOC_014228 rbm48 coding upstream 167826 40177246 ~ 40182642 (+)
XLOC_014233 vps50 coding downstream 5343 40379771 ~ 40686675 (+)
XLOC_014234 NA coding downstream 318000 40692428 ~ 40736984 (+)
XLOC_014235 si:ch211-120e1.1 coding downstream 458065 40832493 ~ 40834956 (+)
XLOC_014236 gngt1 coding downstream 482106 40856534 ~ 40859468 (+)
XLOC_014237 zgc:85777 coding downstream 487425 40861853 ~ 40898600 (+)
XLOC_014224 NA non-coding upstream 283877 40057836 ~ 40066591 (+)
XLOC_014222 BX957260.1 non-coding upstream 381010 39927406 ~ 39969458 (+)
XLOC_014221 BX957260.2 non-coding upstream 475521 39874831 ~ 39874947 (+)
XLOC_014220 NA non-coding upstream 598294 39750058 ~ 39752174 (+)
XLOC_014238 CR749767.1 non-coding downstream 584072 40958500 ~ 40958616 (+)
XLOC_014243 NA non-coding downstream 813384 41187812 ~ 41191519 (+)
XLOC_014244 NA non-coding downstream 859380 41233808 ~ 41238528 (+)
XLOC_014252 NA non-coding downstream 1463323 41837751 ~ 41841201 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_02840361_02849268 NA coding CI01000054 null 2839832 ~ 2849268 (-)