RNA id: TCONS_00028295


Basic Information

Item Value
RNA id TCONS_00028295
length 1950
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_014232
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40350468 ~ 40374428 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATACTGTCACCAGTTCCCTTTTCTTGTCACACAGCTTCTACAGATTATATAGCTCAAATGGAATGTGTTGAAGTCACCATGATCCTGCTGATATGCAGCTTATTTGTCATAATATCTGGCTCCGACCCTGAATACATTCGGCTTCAGCCCACGCAGCATGGCAGAAAAGGGGAATCTATGAATCTCAGAGTCGAGACTCTCTTTAATGTCAAGGATGTGCCGTTCCAGGGATCCTGGTTCAAGACCAGGCCCAAAGTCACGCCTTTGGTCACTTTCCAGTTTTCTCCCAGTACAACCAGTTCCATTCCCAATCTGCTAGTGAAGAACATCACAATGCAGGAACTGCCCGATGTTTCTCTGAGGTTTGTGAATCTGGATGAAGACACAAAGGGGGAATACGAGCTGCAGGTCAACATCGTTTTTGATGAAAACGCTCCTCCAGTTTCTGTCACTAAAACAGTGACGGTTACAGTGAGCGTACCGGTCTCCACTCCTGTTATCAGTAAAACCCCAGAATCTGAACTTGTTGAAGACCGGGACAACGTAACGCTGACTTGTTCTGCTCTACACGGGACGGAGATTCGGTACAAATGGCTAAAGGACAACATGTTGGTTAGTCCAAGCGACCGGCACACATTCTCTGAAGATAACGGGACGCTTTTCATAAACCCTGTTAGGAAAGAAGACATGGGCCAGTACATTTGCGAGGCTCATAACCAGATCAGCAGTGAACAAAGCCAACAGACTGATCTCAGTGTATTCTATGGGCCTTATAACCTGGCAGTAAATTGTGACCAAGCTCTGAAAACGGAAGGGGTTTTTACGGTAAACCCAGGGGAACTGGCGTTTTTTGAGTGTAATGCAGACTCGAATCCTCCAAACACCTTCCTTTGGATCTCAAAAACAGGTAATGGGACTGAGATTGTCATGACGGGGCCAAGGTTGGAGGTGAAGACGTACGAGTTGCCACAGGGGAAGGAGTTCTTGTGCAGAGCTTTCAATAACGCCACGAAGAAGCAGGACGAGACCAAGTTCACACTGGTCGTGGCCAGACTGCACAGAGGAAAAGCGAAATTTCTCCAGGAAGGGAGCGTGATGTCTCCGCTGGCGTTAGTTACGGTCACTTCAGTGGTCATCATCGTGTGTATGATGTTTGTGCTGCTGAGGAAGAGCTGCCATCCCAAAAGAGTTGTGAAGAATTTCTGCAGGCGGACGATGACGGAGCAGAGAGGACTTCACCGCTCTGGTCATGAAAGTGCAACCGAGGACTTTGGAATCTATGAATTTGTCTCTGTGGGTGGGAAAATGGAGTCAacacagGCATCCTGCAGGTCTTTGACACGGCTGGATTCAGTCAGAGATTTGCATACCACCATCTATGATGTCATCAGACATGTGCCTGAAACGCCAACACTGAGTCTTTTGAAATGAGAGCCGGATGCTCACGTGGGCTCAGATGAAAGATTCTTCTCGCTACAGTCACACATTCAAGCACttcttttgttttacaattattccTTTTTGTACTTTTGCAAATCTTAAACTCCTGAAAATCGTACAACTTGTGCTGCGCACTGATGTTTATATGATCTTTAAAATATACAAGAGgattatcagattttttttctgtagcaAAATGCTTTGAGTATTTATATATGAATGCAGCCGCCTTCTAACGTTGTTGTTTTTGTCccattttgaatgtaaatatgatgtttgtgttttgtacttgtaaaaaaaaagaatgtatttTTTGCACACTGCAGTGTATTGCCATATTTCTCATTACATCTTAAATGTCCCGAACCCTTTACATTTACACAGCAGCTTTTGAATGTAAAGCAGACATCTTCTGTCCGTTCTGTTGTTTATGTCTGGCACCTGCTCatatgttaacaaagatgaatgatCCAcaactgcaaaataaaataaaggtttgtaAAAATA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-135 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism; mucus secreting cell; and pancreatic bud. Orthologous to human HEPACAM2 (HEPACAM family member 2).

Ensembl:

ensembl_id ENSDART00000087444

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028294 lncRNA upstream 9839 40337564 ~ 40340629 (+) True XLOC_014231
TCONS_00030027 lncRNA upstream 17374 40328712 ~ 40333094 (+) False XLOC_014230
TCONS_00030026 lncRNA upstream 17374 40328712 ~ 40333094 (+) True XLOC_014230
TCONS_00030025 lncRNA upstream 138276 40186156 ~ 40212192 (+) False XLOC_014227
TCONS_00030028 lncRNA downstream 318000 40692428 ~ 40736984 (+) True XLOC_014234
TCONS_00030029 lncRNA downstream 813384 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00030030 lncRNA downstream 859380 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00030031 lncRNA downstream 1463323 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA downstream 1463643 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00028291 mRNA upstream 2525 40337457 ~ 40347943 (+) False XLOC_014231
TCONS_00028292 mRNA upstream 4323 40337534 ~ 40346145 (+) False XLOC_014231
TCONS_00028290 mRNA upstream 5711 40335271 ~ 40344757 (+) False XLOC_014231
TCONS_00028287 mRNA upstream 21919 40248697 ~ 40328549 (+) False XLOC_014229
TCONS_00028289 mRNA upstream 25859 40322912 ~ 40324609 (+) True XLOC_014229
TCONS_00028296 mRNA downstream 5343 40379771 ~ 40477359 (+) False XLOC_014233
TCONS_00028297 mRNA downstream 5446 40379874 ~ 40685412 (+) False XLOC_014233
TCONS_00028298 mRNA downstream 266910 40641338 ~ 40686675 (+) True XLOC_014233
TCONS_00028299 mRNA downstream 458065 40832493 ~ 40834956 (+) True XLOC_014235
TCONS_00028300 mRNA downstream 482106 40856534 ~ 40859468 (+) False XLOC_014236
TCONS_00028293 other upstream 5731 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 223704 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 295077 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 475521 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028264 other upstream 1401782 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028303 other downstream 584072 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028333 other downstream 1814562 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 1962889 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 2358260 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 2540991 42915419 ~ 42915541 (+) True XLOC_014274

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_02840361_02849268.mRNA True 1830 mRNA 0.41 8 CI01000054 2839832 ~ 2849268 (-)