Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028300 |
| length | 882 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 3 |
| gene id | XLOC_014236 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 40856534 ~ 40859468 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005834 | heterotrimeric G-protein complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0031680 | G-protein beta/gamma-subunit complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0031681 | G-protein beta-subunit binding | molecular_function |
| id | description |
|---|---|
| ko04014 | Ras signaling pathway |
| ko04371 | Apelin signaling pathway |
| ko04151 | PI3K-Akt signaling pathway |
| ko04062 | Chemokine signaling pathway |
| ko04926 | Relaxin signaling pathway |
| ko04724 | Glutamatergic synapse |
| ko04727 | GABAergic synapse |
| ko04725 | Cholinergic synapse |
| ko04728 | Dopaminergic synapse |
| ko04726 | Serotonergic synapse |
| ko04723 | Retrograde endocannabinoid signaling |
| ko04744 | Phototransduction |
| ko04713 | Circadian entrainment |
| ko05200 | Pathways in cancer |
| ko05170 | Human immunodeficiency virus 1 infection |
| ko05163 | Human cytomegalovirus infection |
| ko05167 | Kaposi sarcoma-associated herpesvirus infection |
| ko05032 | Morphine addiction |
| ko05034 | Alcoholism |
| ko04031 | GTP-binding proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-7596 | Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in brain; testis; and visual system. Orthologous to several human genes including GNGT1 (G protein subunit gamma transducin 1). |
| ensembl_id | ENSDART00000051950 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030028 | lncRNA | upstream | 119550 | 40692428 ~ 40736984 (+) | True | XLOC_014234 |
| TCONS_00028294 | lncRNA | upstream | 515905 | 40337564 ~ 40340629 (+) | True | XLOC_014231 |
| TCONS_00030027 | lncRNA | upstream | 523440 | 40328712 ~ 40333094 (+) | False | XLOC_014230 |
| TCONS_00030026 | lncRNA | upstream | 523440 | 40328712 ~ 40333094 (+) | True | XLOC_014230 |
| TCONS_00028286 | lncRNA | upstream | 651064 | 40186385 ~ 40205470 (+) | True | XLOC_014227 |
| TCONS_00030029 | lncRNA | downstream | 328344 | 41187812 ~ 41191519 (+) | True | XLOC_014243 |
| TCONS_00030030 | lncRNA | downstream | 374340 | 41233808 ~ 41238528 (+) | True | XLOC_014244 |
| TCONS_00030031 | lncRNA | downstream | 978283 | 41837751 ~ 41841201 (+) | False | XLOC_014252 |
| TCONS_00030032 | lncRNA | downstream | 978603 | 41838071 ~ 41841201 (+) | True | XLOC_014252 |
| TCONS_00030033 | lncRNA | downstream | 1268455 | 42127923 ~ 42140654 (+) | True | XLOC_014255 |
| TCONS_00028299 | mRNA | upstream | 21578 | 40832493 ~ 40834956 (+) | True | XLOC_014235 |
| TCONS_00028298 | mRNA | upstream | 169859 | 40641338 ~ 40686675 (+) | True | XLOC_014233 |
| TCONS_00028297 | mRNA | upstream | 171122 | 40379874 ~ 40685412 (+) | False | XLOC_014233 |
| TCONS_00028296 | mRNA | upstream | 379175 | 40379771 ~ 40477359 (+) | False | XLOC_014233 |
| TCONS_00028295 | mRNA | upstream | 482106 | 40350468 ~ 40374428 (+) | True | XLOC_014232 |
| TCONS_00028302 | mRNA | downstream | 2385 | 40861853 ~ 40898600 (+) | True | XLOC_014237 |
| TCONS_00028304 | mRNA | downstream | 123753 | 40983221 ~ 41002980 (+) | True | XLOC_014239 |
| TCONS_00028306 | mRNA | downstream | 147507 | 41006975 ~ 41034224 (+) | False | XLOC_014240 |
| TCONS_00028305 | mRNA | downstream | 147507 | 41006975 ~ 41034224 (+) | True | XLOC_014240 |
| TCONS_00028307 | mRNA | downstream | 216020 | 41075488 ~ 41160943 (+) | False | XLOC_014241 |
| TCONS_00028293 | other | upstream | 511797 | 40337554 ~ 40344737 (+) | False | XLOC_014231 |
| TCONS_00028276 | other | upstream | 729770 | 40116262 ~ 40126764 (+) | False | XLOC_014226 |
| TCONS_00028268 | other | upstream | 801143 | 40025928 ~ 40055391 (+) | False | XLOC_014223 |
| TCONS_00028266 | other | upstream | 981587 | 39874831 ~ 39874947 (+) | True | XLOC_014221 |
| TCONS_00028264 | other | upstream | 1907848 | 38948572 ~ 38948686 (+) | True | XLOC_014217 |
| TCONS_00028303 | other | downstream | 99032 | 40958500 ~ 40958616 (+) | True | XLOC_014238 |
| TCONS_00028333 | other | downstream | 1329522 | 42188990 ~ 42189104 (+) | True | XLOC_014257 |
| TCONS_00028342 | other | downstream | 1477849 | 42337317 ~ 42337431 (+) | True | XLOC_014261 |
| TCONS_00028353 | other | downstream | 1873220 | 42732688 ~ 42735285 (+) | False | XLOC_014270 |
| TCONS_00028365 | other | downstream | 2055951 | 42915419 ~ 42915541 (+) | True | XLOC_014274 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU261963 | True | 733 | lncRNA | 0.41 | 3 | CI01000054 | 2611396 ~ 2612378 (+) |
