RNA id: TCONS_00028305


Basic Information

Item Value
RNA id TCONS_00028305
length 2862
RNA type mRNA
GC content 0.47
exon number 18
gene id XLOC_014240
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41006975 ~ 41034224 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCAGTTTAGGATataggggaaaaaaaagtttaaatattaacTAGACTGGTTTGACTTCAGGTTAATCAAATGCAACTGTCTGATGTAAATAATTTGGAACTTAAATCTAATACCAGAAGAAAATGAATCCTGAGGTGGATATGAAAGCTGAGGACTGCAATCACGCAGAAGCTGAAGCACACGCGGGAAACGGGCACGCGCCGCTCGGCTTTGCTTTCGTCAGCTCCGCCGCAGCTCGTCTGTCTGCCTGTTGTCATGGAGGAGCCAAGATGGCGGTCCTGGCCTATAACCTAGGCAAACGggaaataaatcagtatttcagCATCAAAAATGCAAAGTTGCTGGCAGCCGCCGCTGTCGTCCTTCTCACTGTGTTTCACGCGGCTTCTCGACATTATGGAAGCAGTGACACATGTGACTGGCTGTTATCCAGTGGACGTTTTTTAGGGGACAATGTGTGGCAGCCCTATGGGTGCATGTTACACAAGTACAAAAGCACTGAAGCAAAGTTCTGCCTCAGAGAGAAGAGAATAGCATTTGTCGGAGACTCTAGAATACGTCAGCTCTTCTATTCTTTCATCAAAATGATGAACCCTGAGGTGAAAGAAGTTGGGAACAAGCATGAGAACATCCCTTTTGTCGATGGTGATTCCACTGTGAATTTCCTGTGGTACGCAGAAGTGAACAATTCCTTGAAGGAGCAGTTAATGTTATGGACTGAGGGATCTGCTTCCAAACCACATGTCATCATCATTGGTGCTGCTACGTGGTCCATTAAGTTGCACAACGGCAAGAGTGAGGCGCTTTTTCAGTACAAGGCAAACCTCACAGCTATAGCAGACACACTGGAAAAACTAGCCGAGCACAGTGAAGTCTACTGGGTTCTACAAGATCCTGTTTATGAGGATGTGCTAAGTGAAAGCCGAAAGATGATCACAAATGAGCAGATAAATCTGTACAATGAGGCAGCAGTTAGTACCCTGAATACCAGCAAAAAGAAGGTCAAATTCCTGGAGGCATCTAGGCAAGCTGCTATGGAGACCATTTCTCAGTCGGTGGACGGCCTGCATCTTCCTGAGAGCACAAGAGATGTTGGCGCCATGGTACTTATGAACTCCATGTGCAACAAGATCCTGAAGCCCATTGATGGCTCCTGCTGTCAGAGCGCTCCTCCGCTAAGCGTCCTTCAGAAGCTAGCAGCTGCTGTCCTCCTGGTGTCCGTCGTCTGCTTCGTCCTGCTGGGCTTCAGCTCACATCGGAAGAGCAGACCCGCTCCTGATGTGGAGAGCGGAGAGGAGAAAAAACACCCCGCTGCTGTGGGGCAGCTCAACCCAAAGGGACCATTACTGGCCATCGGCAAGATGAGCCTCATCATGCTGTACTTCTACCTGTGTGACCGGGCTGACATCTTTATGAAGGAGCAGAAATTCTACACACACTCCGCTTTTTTCATTCCTCTCATCTACATCTTCGTTCTGGGTGTCTTCTACAGTGAGAACAGCAAAGAGACAAAACTTTTGAACCGAGAGCAGACGGATGAATGGAAGGGCTGGATGCAGCTGGTCATTCTTATTTATCACATTTCTGGAGCCAGCGcattCATACCGGTGTACATGCACGTCCGTGTGCTGGTCGCTGCGTATCTCTTCCAAACAGGATATGGACACTTCTCCTTCTTCTGGCTAAAGGGAGACTTTGGACTTTACAGGGTTTGTCAGGTTCTCTTCAGGCTTAATTTTCTTGTGGTGGTGCTGTGTCTGGTTATGGACAGGCCTTATCAGTTTTATTACTTTGTGCCTCTGGTCACCTTTTGGTTTGCAGTTATTTATGCCACAATGGCACTGTGGCCACAGATTCTTCAAAAGCAAGCTAACGGTAGTGCATTCTGGAATCTGGCCCTGTTGTTGAAACTTCTGGGTTTGCTTCTTTTCATCGGATTTTTTGCATACTCGCAGGAACTGTTTGAGGGCATTTTCTCTGTATGGCCTCTTTCTAAGCTCTTTGAACTGCAAGGAAGCATCCATGAGTGGTGGTTCAGGTGGAAACTGGACCGATTTGCTGTGGTCAATGGGATGCTGTTTGCCTTCATTTACCTGCTGCTGCAGAAATATCAGCTGCTGTCTGAAGGCAAAGGAGAGCCTCTCTTCTCCAACAAGATTTCCAACTGTCTGCTCTTTGTTTCTGTCGTTTCTTTTATGACGTACTCCATTTGGGCCAGTGGGTGCAAAAACAAGTCCGAGTGTAATGAGatgcatccatacatttctgtTGTGCAGATTCTGGCTTTCATTTTGATCCGGAATATTCCTGGTTACGCTCGCTCTTTGTACAGCTCATTCTTTGCATGGTTTGGAAAGATCTCCCTAGAGCTCTTCATATGCCAGTATCACATTTGGTTGGCAGCAGACACCAAGGGCATCCTGGTCCTCATTCCCGGAAACCCCACGTTAAACATAATCGTCAGCACCTTCATCTTTGTCTGCGTGGCTCATGAAATCTCCCAGATCACCAATGACCTGGCCCAGGTGGCCATCCCTAAAGAGAGCGGGCCTCTGCTGAAGAGACTGCTGGGAGCTGGAGTCTTTCTAGTGCTGGTACTGACACTGTCCCAAAAAGACTAAAGCAATCCGGAGTACATCAGAATAAAGGCAGCCCAGAACGTTTATTTCCTAGGAATCAATCCAGGGATCTGTTTAACGCCATTGGTCTGAATACAAAACTCAAGCCAAGGAGCGCCTGTGAAATGGATTCTTGCATTCGACAAATCGCACGAGAAACTGTGTGCAAACTAACGCTCCATCTCTGAGATGAGTTTTACAGacagtatttaataataataatttatgtttgtattttatac

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0047186 N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-329 Predicted to enable N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Orthologous to human CASD1 (CAS1 domain containing 1).

Ensembl:

ensembl_id ENSDART00000049842

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030028 lncRNA upstream 269991 40692428 ~ 40736984 (+) True XLOC_014234
TCONS_00028294 lncRNA upstream 666346 40337564 ~ 40340629 (+) True XLOC_014231
TCONS_00030027 lncRNA upstream 673881 40328712 ~ 40333094 (+) False XLOC_014230
TCONS_00030026 lncRNA upstream 673881 40328712 ~ 40333094 (+) True XLOC_014230
TCONS_00028286 lncRNA upstream 801505 40186385 ~ 40205470 (+) True XLOC_014227
TCONS_00030029 lncRNA downstream 153588 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00030030 lncRNA downstream 199584 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00030031 lncRNA downstream 803527 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA downstream 803847 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00030033 lncRNA downstream 1093699 42127923 ~ 42140654 (+) True XLOC_014255
TCONS_00028304 mRNA upstream 3995 40983221 ~ 41002980 (+) True XLOC_014239
TCONS_00028302 mRNA upstream 108375 40861853 ~ 40898600 (+) True XLOC_014237
TCONS_00028300 mRNA upstream 147507 40856534 ~ 40859468 (+) False XLOC_014236
TCONS_00028301 mRNA upstream 147716 40856807 ~ 40859259 (+) True XLOC_014236
TCONS_00028299 mRNA upstream 172019 40832493 ~ 40834956 (+) True XLOC_014235
TCONS_00028307 mRNA downstream 41264 41075488 ~ 41160943 (+) False XLOC_014241
TCONS_00028308 mRNA downstream 46016 41080240 ~ 41129373 (+) False XLOC_014241
TCONS_00028309 mRNA downstream 98205 41132429 ~ 41142175 (+) True XLOC_014241
TCONS_00028310 mRNA downstream 135772 41169996 ~ 41182251 (+) False XLOC_014242
TCONS_00028311 mRNA downstream 139162 41173386 ~ 41178235 (+) True XLOC_014242
TCONS_00028303 other upstream 48359 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 662238 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 880211 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 951584 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 1132028 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028333 other downstream 1154766 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 1303093 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 1698464 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 1881195 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 2043520 43077744 ~ 43077879 (+) True XLOC_014279

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_02514735_02525669.mRNA True 2413 mRNA 0.47 16 CI01000054 2514659 ~ 2525669 (-)
bowfin (Amia calva) AMCG00021536 True 4772 mRNA 0.51 18 CM030130.1 20829853 ~ 20842424 (+)