RNA id: TCONS_00028296


Basic Information

Item Value
RNA id TCONS_00028296
length 1045
RNA type mRNA
GC content 0.51
exon number 12
gene id XLOC_014233
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40379771 ~ 40686675 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAGTGAACATGGCACCTGTCTAGCACTGCAGGAATCGCCTTTTGACAGAAAAGCATCACAGAAAACATCGCGTTTTACTGTTTAGTGTCCTCGACTGTTCGATGCAGAAAATCAAGTCTCTGATGGCCCGTCAGGGTCTGAAAAGTCCTCAGGAAAGTGTGGTTGACATGAGCCCTGTGGAGAGCTTCAGGACTCCCAGCAAGGAGGAGCTGAGGGAGCTGAGAGAGCAGCCCACGGATCCACAGGCAGAACAAGAAATCATTGACAGCATAGAGGAAGTCTACTACTCCAGCGACTCGTTTGACATGGTTCAATATGAACTTGAgAAACTCCCTCCGGATCTGAACCTTCTGGAGCTGGAGGAGTACAGAGATAAGCTGAAGCGACAGCAAGCAGCCGTGTCTAAACGAGTGGCGGACCTCATTCTGGAGAAACAGCCCTCCTATGTGAAGGAACttgagcgagtgacgtcactgcaAACCAATCTGCAGCTGGCTGCGGTCATCTGCACTAATGCACGAAGACAGCTTCGCTCTGCTAAAGAAGGTTTCACTGAAGCCAGTCTTGGGCTGTTAGCCAATCAGAGACGTCGACAGCTGCTGACAGGACTGTTGAAGTCTTTGAGGACCATAAAGACTCTGCAAAGAACTGATGTTCGACTGAGCGAAATGCTGGAGGAGGAGGACTATCCTGGCGCCATCCAGCTGTGTTTAGAATGCCAGAAAGCTGCCAGCACTTTCAAACACTACAACTGTATAAGTGAACTGAACTCCAAACTACAGGACACTCTGGAGCAAATCGAGGAGCAGCTGGATGTGGCTCTGTCCAAAACCTGCAAGCACTTCGATGTTTCTCACTACACCAAAGTTCAGCTGGCGTATAAACTCCTGGGCAAGACGCAGACGGCGATGGATCAGCTGCACATGCACTTCACCCAGGCCATCCACAACACCGTCTTCCAGGTGGTGCTGGGATACGTGGAACTCTGCGCCGGCAATGCAGACACCAAGTTCCAGAAGATGCAGTACAAAGACCTTTGCACG

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0032456 endocytic recycling biological_process
GO:1990745 EARP complex cellular_component
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060503-325 Predicted to enable SNARE binding activity. Predicted to be involved in endocytic recycling. Predicted to act upstream of or within retrograde transport, endosome to Golgi. Predicted to be part of EARP complex. Is expressed in head and heart. Orthologous to human VPS50 (VPS50 subunit of EARP/GARPII complex).

Ensembl:

ensembl_id ENSDART00000017917

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028294 lncRNA upstream 39142 40337564 ~ 40340629 (+) True XLOC_014231
TCONS_00030027 lncRNA upstream 46677 40328712 ~ 40333094 (+) False XLOC_014230
TCONS_00030026 lncRNA upstream 46677 40328712 ~ 40333094 (+) True XLOC_014230
TCONS_00028286 lncRNA upstream 174301 40186385 ~ 40205470 (+) True XLOC_014227
TCONS_00028285 lncRNA upstream 188272 40186385 ~ 40191499 (+) False XLOC_014227
TCONS_00030028 lncRNA downstream 215069 40692428 ~ 40736984 (+) True XLOC_014234
TCONS_00030029 lncRNA downstream 710453 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00030030 lncRNA downstream 756449 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00030031 lncRNA downstream 1360392 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA downstream 1360712 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00028295 mRNA upstream 5343 40350468 ~ 40374428 (+) True XLOC_014232
TCONS_00028291 mRNA upstream 31828 40337457 ~ 40347943 (+) False XLOC_014231
TCONS_00028292 mRNA upstream 33626 40337534 ~ 40346145 (+) False XLOC_014231
TCONS_00028290 mRNA upstream 35014 40335271 ~ 40344757 (+) False XLOC_014231
TCONS_00028287 mRNA upstream 51222 40248697 ~ 40328549 (+) False XLOC_014229
TCONS_00028298 mRNA downstream 163979 40641338 ~ 40686675 (+) True XLOC_014233
TCONS_00028299 mRNA downstream 355134 40832493 ~ 40834956 (+) True XLOC_014235
TCONS_00028300 mRNA downstream 379175 40856534 ~ 40859468 (+) False XLOC_014236
TCONS_00028301 mRNA downstream 379448 40856807 ~ 40859259 (+) True XLOC_014236
TCONS_00028302 mRNA downstream 384494 40861853 ~ 40898600 (+) True XLOC_014237
TCONS_00028293 other upstream 35034 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 253007 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 324380 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 504824 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028264 other upstream 1431085 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028303 other downstream 481141 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028333 other downstream 1711631 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 1859958 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 2255329 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 2438060 42915419 ~ 42915541 (+) True XLOC_014274

Expression Profile

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