RNA id: CI01000054_02840361_02849268.mRNA


Basic Information

Item Value
RNA id CI01000054_02840361_02849268.mRNA
length 1830
RNA type mRNA
GC content 0.41
exon number 8
gene id CI01000054_02840361_02849268
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2839832 ~ 2849268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACAGACTCTGAATACATTTCACTGCAGTCCACACAGCATGGGAAAATTGGCGACTCTATGCTGCTCAGAGTAGAGACTCATTTTGATGTTCAGGATGTAACGTTCCAGGGGACCTGGTGTAAAACTAAGCCTATTTACACTCATTTGGTCACTTTCACCGAGACCAGAGACATCCCAAATCTGCGCCTAAAGAACAATCCAATGCTTATTTTGCCTAATGGTTCACTATATTTTGAGCATCTGGAAGAGGACACACAGGGGGAATACGAGCTGCAGCTCAACATCATCTTCCCAGGAAGCTCCGATATAGTGAATGTCACTAAAACAGTGACAATCACAGTCAGCGTGCCTGTGTCCATCCCCATAATTAGTAAGACCCCTGACTCAGAAATCGTGGAAGACAGGGACAATGTGACGCTGACTTGCTCTGTTGAACATGGGACAAATGTTCAGTTCAAATGGCTAAAGAACAACATGTTGATTGGTCCAAGTGACCGGCATACATTCTCACAAGATAATAGAACGCTTTTTATAAACCCTGTCAAGAAAGAAGACATCGGTCAATACATTTGTGAGGCCCAAAACTACATTAGCAAAATCCAAAGCAAACAGGCTGATCTCAGTGTGTTCTACGGGCCTTATAACCTGGCAGTAAATTCTGACCAAGGTCTGAAAATTGGAGGCGTGTTCACAGTGAACCCAGGTGACCTGGTCTTTTTTGAGTGTATTGCGGACTCGAACCCTCCCAACACCTGCGTCTGGATCTCTACAACAAAGAACGGCACAGAGGTTCTCAAGACTGGACCACGGTTTGAAGTGAAGCCTTATGAGTTACCCCAGGGTAAAGAGTTCTTGTGTAGAGCATTCAACAGTGTGACGAAGAAGCATGACGAGACCAAGTTCACACTGGTGGTGGCCAGTCTCGGCACAGGAAAAGCAAAATACATCCAGGAAGGGAGTGTGCTGTCTCCATTGACTTTTATTACAGTCTTCTCAGCCATCATCATAGTGTGTATGATGTTTGTGCTCCTAAGGAAGAGCTGCCATCCAAAAAGAATGATAAAGACTATCTACAGGCGGCCTATGACAGAGCAGAGAGGACTGCACCGCTCCGGTCATGAAGATGCAGCTGAAGACTTTGGCATCTATGAATTTGTCTCTGTACCTGGGAAAATGGATTCAACACAGGCATCCTGCAGGTCTTTGGCACGGCTCGATTCAGTCAGAGATTTGCATACCACCATCTACGATGTCATCAGACATGTGCCTGAAACTCCAACACTGAGTCTATTGAAATGAGAGAGGTGGAGAGTAACGTGTGTTCAGATGTAAAGATGAAAAGCATTTTACTATTTTTTTCCTTGCCATTTTTTTTTCTCAGTCACACATTTAAACACTTCTTTTGCTTTACAGTTAATCATTTTTATACTTCCTTTTTATACTTCCAAAAGTCTGAAAATCATACATTTATAAACTTGTGCTGGGCACTGAAGTTTTTGTTGTCTTAAAAAATATATATAAGAAAGAGAACTATGAGATTTTATTCTGTAGCGACATGCTTAATGAAAAACTAAAGAGTATTTATATATAAATACAGTCGCTATCTAACGTTGTTTTTTGAATGTAAATATGATGTATGCATTTTGTACGTTTGAAACTATTTTTTTGCACACTGCAGTGTATTCTGTGATATTGCTCATTACATTTAAAGATGCCACATTTCATGTTTTCGAATGTAAAACAGACATCTTCTGTATGATTTGTTCTCTATGTGTTGCACCTGTTCACATTTTAAACACAGATGGATGCTTTGTAATTTGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262174 lncRNA downstream 143872 2695624 ~ 2695960 (-) True G230999
TU262172 lncRNA downstream 145394 2694209 ~ 2694438 (-) True G230997
TU262153 lncRNA downstream 224359 2613035 ~ 2615473 (-) True G230978
TU262150 lncRNA downstream 256012 2583331 ~ 2583820 (-) True G230977
TU262138 lncRNA downstream 285889 2553484 ~ 2553943 (-) True G230965
TU262081 lncRNA upstream 14132 2863400 ~ 2866640 (-) True G230913
TU262176 lncRNA upstream 67967 2917235 ~ 2917797 (-) True G231001
TU262093 lncRNA upstream 68759 2918027 ~ 2979454 (-) True G230922
TU262074 lncRNA upstream 101513 2950781 ~ 2952641 (-) False G230910
TU262075 lncRNA upstream 101513 2950781 ~ 2952641 (-) False G230910
CI01000054_02825786_02828251.mRNA mRNA downstream 11581 2825753 ~ 2828251 (-) True CI01000054_02825786_02828251
CI01000054_02709494_02814598.mRNA mRNA downstream 24932 2709489 ~ 2814900 (-) True CI01000054_02709494_02814598
CI01000054_02611877_02612240.mRNA mRNA downstream 227438 2611672 ~ 2612394 (-) True CI01000054_02611877_02612240
CI01000054_02593560_02610677.mRNA mRNA downstream 229155 2593560 ~ 2610677 (-) True CI01000054_02593560_02610677
CI01000054_02529145_02537881.mRNA mRNA downstream 301951 2528905 ~ 2537881 (-) True CI01000054_02529145_02537881
CI01000054_02857402_02860451.mRNA mRNA upstream 8134 2857402 ~ 2860451 (-) False CI01000054_02857402_02860451
CI01000054_02868603_02911589.mRNA mRNA upstream 19176 2868444 ~ 2911805 (-) True CI01000054_02868603_02911589
CI01000054_02985381_02988122.mRNA mRNA upstream 136092 2985360 ~ 2988161 (-) True CI01000054_02985381_02988122
CI01000054_02999099_03015534.mRNA mRNA upstream 149512 2998780 ~ 3015534 (-) True CI01000054_02999099_03015534
CI01000054_03018229_03030984.mRNA mRNA upstream 168808 3018076 ~ 3030984 (-) True CI01000054_03018229_03030984
TU262094 other downstream 2150 2837237 ~ 2837682 (-) True G230923
TU261218 other downstream 1609697 1185533 ~ 1230135 (-) False G230178
TU262064 other upstream 4873 2854141 ~ 2859545 (-) False G230906
TU262065 other upstream 4873 2854141 ~ 2859545 (-) True G230906
TU262068 other upstream 208380 3057648 ~ 3063343 (-) True G230908
TU262888 other upstream 1132579 3981847 ~ 3982823 (-) True G231645
TU263226 other upstream 1820883 4672197 ~ 4672233 (-) True G231958

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028295 True 1950 mRNA 0.44 9 NC_007130.7 40350468 ~ 40374428 (+)