RNA id: CI01000054_02529145_02537881.mRNA


Basic Information

Item Value
RNA id CI01000054_02529145_02537881.mRNA
length 3060
RNA type mRNA
GC content 0.58
exon number 30
gene id CI01000054_02529145_02537881
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2528905 ~ 2537881 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTACATTTATGTTTCCTGCAGGGAGCTGCTGGTACTCGTGGTCTGCCTGGTCTGGCTGGAAGATCGGGCCCAATGGGCATGCCTGGTGCCCGTGGTGCCACTGGTGCCCCTGGAGCCCGTGGACCTCCTGGAGATGCTGGTCGTGCTGGGTCTCCCTGGTAGCCCTGGCAGTTCTGGACCCCCTGGAAAGGAAGGACCTGCTGGTCCCGCTGGTCAAGATGGTCGCTCTGGCCCCCCTGGACCAACTGGACCCAGAGGCCAGCCTGGTAATATTGGATTCCCCGGTCCTAAGGGACCTTCTGGCGAGCCTGGCAAGCCTGGTGAGAAGGGACCTGCTGGCCCAACTGGACTGAGAGGTCAACCTGGTCCTGATGGTAACAACGGCCCTGCTGGTCCCGTCGGACTTGCTGGTGCCCCAGGTGAGAAAGGAGAGCAGGGACCCTCTGGTGCTCCTGGTTTCCAGGGTCTTCCTGGCCCCGCTGGACCCGTTGGTGAGGCTGGCAAGCCCGGAGATAGAGGTATCCCTGGAGATCAAGGTGCATCAGGACCTGCTGGCGTGAAGGGAGAGCGTGGTAACCCTGGACCCGCTGGTGCTGCTGGCGCTCAGGGACCCATTGGGGCTCGTGGCCCTTCTGGTACTCCTGGCCCTGATGGAAACAAGGGAGAGCCTGGTGCAGTTGGAGCTGCTGGTGCCCCTGGACACCAGGGAGCTGCTGGCATGCCTGGTGAGCGTGGTGCTGCTGGCACCCCTGGACCTAAGGGAGAGAAGGGTGAACAAGGATACAGAGGACTAGAGGGCAACGCTGGAAGAGATGGTGCCCGTGGTGCTCCTGGACCCAGTGGACCCCCTGGACCCGCAGGTGCTAATGGTGACAAGGGTGAGACTGGCTCCTTCGGTCCTCCTGGACCAGCTGGTGCTCGTGGTGCTCCTGGGGAGCGTGGTGAGTCTGGCCCTGCTGGACCTTCCGGTTTTGCTGGACCCCCTGGTGCTGATGGCCAGACTGGACAAAGAGGTGAGAAAGGACCTGCTGGTGTAAAGGGAGACGCTGGACCTCCTGGCCCTGCTGGTCCCGCTGGCAATACTGGACCCCTCGGTCCTTCTGGTCCTGTTGGCCCACCTGGTGCCCGTGGTGACAGTGGTCCCCCTGGTCTGACTGGCTTCCCTGGTGCTGCTGGCAGAGTTGGACCTCCTGGTCCTTCTGGTATTGTTGGACCTGCTGGTCCCACTGGTGCTCCTGGAAAGGATGGCCCACGTGGTGCTCGTGGTGATGTTGGCCCTGCTGGTCCCCCAGGAGAGAATGGAATTATTGGACCCCCAGGTCTGGCTGGTGAGAAGGGATCTCCTGGAGAGTCTGGCGCACCTGGAGCACCTGGACTTGCTGGGCCTCAGGGTCAGCTGGGATCTCAGGGATTCAATGGTCTTCCTGGCTCCAGAGGTGACCGTGGTCTTCCTGGTGGCCCCGGTGCTGTTGTAAGTGCACTGAACAACGTCCTAATTGTGTCCGGTCAGGGTGATGCTGGAAGAGTTGGCCCTGCTGGTGCCCCTGGTTCCCGTGGTCCCGCTGGTAACATTGGCATGCCCGGTATGACTGGTCCTCAGGGTGAGGCTGGACGTGAGGGAAGCCCTGGTAATGATGGACCTCCTGGCCGTCCTGGTGCTGCTGGCCTTAAGGGACCTTCTGGTTCTTCTGGCCCTGTTGGACCTGCTGGAGCAAGAGGTGCACCTGGCCCTGCTGGACCTCGTGGTGAGAAGGGTGTTGCTGGAGACAAAGGAGAAAGGGGCATGAAGGGACTTCGTGGACATCCTGGTCTGCAGGGAATGCCCGGACCCAGTGGTCCTTCTGGTGACAGTGGCGCTGCTGGTATTGCTGGTCCTGCTGGTCCAAGAGGCCCAGCTGGTCCTAATGGTCCCCCTGGTAAGGATGGTTCAAATGGCATGCCTGGTGCTATTGGACCCCCTGGACACCGTGGTCCTCCTGGTTATGTTGGACCTGCTGGTCCTCCTGGAACTCCTGGTCTTCCCGGACCCCCTGGCCAAGCTGGTGGTGGATATGACACATCTGGTGGCTATGATGAGTACAGAGCTGACCAGGCCTCTCTCAGGGCCAAGGATTATGAGGTGGATGCCACCATCAAGTCCTTGAACACTCAGATTGAGAATCTGCTTTCCCCTGAGGGCTCAAAGAAGAACCCTGCTCGTACCTGCCGCGACATCAGGCTGAGTCACCCAGAATGGAGCAGCGGATTCTACTGGATCGACCCCAACCAGGGCTGCACCATGGATGCCATCAAGGCTTACTGCGACTTTTCTACTGGACAGACCTGCATCCACCCCCACCCCGAGAGCATCCCACAAAAGAACTGGTACAGAAGCTCCCAGGAGAAGAAACACATTTGGTTTGGCGAGACCATCAATGGTGGTACTGAGTTTTCTTACAATGATGAGACCCTGAGCCCACAGTCCATGGCTACTCAGCTGGCCTTCATGCGCCTGCTGGCTAACCAGGCAGTCCAGAACATCACCTACCACTGCAAGAACAGCATCGCCTACATGGATGCTGAGAATGGAAACCTGAAGAAGGCTGTGTTGCTGCAGGGCTCCAACGATGTGGAGCTCAGGGCGGAGGGCAACAGCCGCTTCACGTTCAGCGTCCTAGAGGATGGCTGCAGTAGACACACTGGCCAGTGGAGCAAGACAGTCATTGAATACAGAACGAATAAACCATCTCGCCTTCCCATCCTCGACATTGCACCTTTGGACATTGGTGGCGCAGATCAAGAGTTTGGTTTGGACATTGGCCCAGTCTGTTTCAAATAAATAGACTCATGATAAATTAAACAAGAGAAAGAAAGAAAAAAGAAAAATCTCTGCCCTTCTTTCTGTGTTTTTTTATACTGAATGCTGATTTTTTCTGCAAATCCACTTGCTTAAGCTGGGCTCTATCGGAGAGGACCAATGGACTGAACGGAGCATTGCGCAATGCAAATTAATACAGCAGCCCAAAGAGACGCGGGATAACACCATGTTATGGGACATGTCATCATTTTGTAAAATAAA

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06236 COL1A; collagen type I alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262053 lncRNA downstream 301800 2225164 ~ 2227105 (-) True G230897
TU262043 lncRNA downstream 406342 2122228 ~ 2122563 (-) True G230888
TU262041 lncRNA downstream 408574 2120077 ~ 2120331 (-) True G230886
TU262040 lncRNA downstream 416178 2112451 ~ 2112727 (-) True G230885
TU262036 lncRNA downstream 420303 2105736 ~ 2108602 (-) True G230883
TU262134 lncRNA upstream 9255 2547136 ~ 2547358 (-) True G230961
TU262135 lncRNA upstream 9813 2547694 ~ 2547909 (-) True G230962
TU262136 lncRNA upstream 12096 2549977 ~ 2550344 (-) True G230963
TU262137 lncRNA upstream 13546 2551427 ~ 2551643 (-) True G230964
TU262138 lncRNA upstream 15603 2553484 ~ 2553943 (-) True G230965
CI01000054_02514735_02525669.mRNA mRNA downstream 3236 2514659 ~ 2525669 (-) True CI01000054_02514735_02525669
CI01000054_02491166_02492438.mRNA mRNA downstream 36467 2491065 ~ 2492438 (-) True CI01000054_02491166_02492438
CI01000054_02486241_02489469.mRNA mRNA downstream 39211 2485602 ~ 2489694 (-) True CI01000054_02486241_02489469
CI01000054_02439354_02469735.mRNA mRNA downstream 59170 2439354 ~ 2469735 (-) True CI01000054_02439354_02469735
CI01000054_02434020_02435538.mRNA mRNA downstream 93367 2433272 ~ 2435538 (-) True CI01000054_02434020_02435538
CI01000054_02593560_02610677.mRNA mRNA upstream 55679 2593560 ~ 2610677 (-) True CI01000054_02593560_02610677
CI01000054_02611877_02612240.mRNA mRNA upstream 73791 2611672 ~ 2612394 (-) True CI01000054_02611877_02612240
CI01000054_02709494_02814598.mRNA mRNA upstream 171608 2709489 ~ 2814900 (-) True CI01000054_02709494_02814598
CI01000054_02825786_02828251.mRNA mRNA upstream 287872 2825753 ~ 2828251 (-) True CI01000054_02825786_02828251
CI01000054_02840361_02849268.mRNA mRNA upstream 301951 2839832 ~ 2849268 (-) True CI01000054_02840361_02849268
TU261218 other downstream 1298770 1185533 ~ 1230135 (-) False G230178
TU262094 other upstream 299356 2837237 ~ 2837682 (-) True G230923
TU262064 other upstream 316260 2854141 ~ 2859545 (-) False G230906
TU262065 other upstream 316260 2854141 ~ 2859545 (-) True G230906
TU262068 other upstream 519767 3057648 ~ 3063343 (-) True G230908
TU262888 other upstream 1443966 3981847 ~ 3982823 (-) True G231645

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028304 True 5750 mRNA 0.52 50 NC_007130.7 40983221 ~ 41002980 (+)
bowfin (Amia calva) AMCG00021537 True 5501 mRNA 0.57 47 CM030130.1 20797698 ~ 20827291 (+)