CI01000054_02593560_02610677


Basic Information

Item Value
gene id CI01000054_02593560_02610677
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2593560 ~ 2610677 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02593560_02610677.mRNA
ATGGCACTGCGCGCTAAAGTCTTGAGATTTAGTCTGGCTGTGAATCGTAATTTACCCAAAACAAGTGTTGTCTGCAACAAACGGCACTTGTCTGAAAAATCGTCCTCCAATCCGAAAGCATCCGTTTCTACCGAAAATATCGATCATGTTCTCTACACAGAGGAACATTTAGCATTAAAGTCATCTTTGAGAAAGATCATCGATCAAGAGATCAACCCTTATGTTGATAAATGGGAGGAAGAAGGGCAGTTTCCTGCCCATAAGATCTTCAAAATCCTGGGAAGTGCAGGATTTCTGGGAGTCAACAAACCTGTGGAGTATGGAGGTCTGGGATTGGACTTCAGCTACAGTTTGGCTGTGGCTGAAGAACTGGGGAACATCAACTGTGGAGGGATTCCCATGGCCATCGGCGTTCAGAGTGACATGGCTACACCTGCTCTGGCGAGGTTTGGTTCTGCAGAGCTCAAGAGAGAATTCTTGCAGCCCACCATAATGGGAGACATAGTGGCCTGCCTCGGGGTGAGCGAAACGGGGGCCGGCTCTGATGTAGCAAGCATCAAGACGAAAGCTGTGCGCAAAGGAGATGAGTTTATCATTAATGGAGGAAAGATGTGGACTACTAATGGCACACAAGCAGACTGGATGTGCCTCCTGGCCAACACCAGTGATGACTCTCCACACAAGAACAAATCCCTTATCTGCTTACCCATGAATCTGCCTGGCGTTCATATCGCACGTAAAATTGATAAAATGGGCATGTGGTCATCGGATACAGCAGAAGTGTTTTTTGATGACGTGCACGTGCCCTGCAAAAATATCATAGGGCAGGAGGGAATGGGCTTCACTTACCAGATGCTTCAATTCCAGGAGGAGCGACTCTGGGGGGTGGCCAATATCCTGACGGTGATGGAGAAAGTTGTCCAAGAGACCATTAATTACACCAGACAGAGGAAGATCTTCAATCAGCCGATTCTGCACCACCAGGTCGTTCACTTCAGGCTGGCTGAGCTGCAGACAGAAATAGAGCTGTTGCGCTCACTTTTGCATCGTGCCACAGCTCTGTACATTAAGGGAAACGATGTGACAAAGTTGGCGTCGATGGCCAAGCTGAAGGCAGGACGACTGGCCCGAGAGGTCAGTGACAGCTGCCTGCAGTACTGGGGTGGCATGGGCTTTACCAGTGGCGTCCTAGTCAGCAGGTTCTACAG

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K11731 atuD; citronellyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02593560_02610677.mRNA True 1208 mRNA 0.49 8 2593560 2610677

Neighbor

gene id symbol gene type direction distance location
CI01000054_02529145_02537881 COL1A2 coding downstream 55679 2528905 ~ 2537881 (-)
CI01000054_02514735_02525669 CASD1 coding downstream 67891 2514659 ~ 2525669 (-)
CI01000054_02491166_02492438 NA coding downstream 101122 2491065 ~ 2492438 (-)
CI01000054_02486241_02489469 NA coding downstream 103866 2485602 ~ 2489694 (-)
CI01000054_02439354_02469735 PPP1R9A coding downstream 123825 2439354 ~ 2469735 (-)
CI01000054_02611877_02612240 GNGT1 coding upstream 995 2611672 ~ 2612394 (-)
CI01000054_02709494_02814598 VPS50 coding upstream 98812 2709489 ~ 2814900 (-)
CI01000054_02825786_02828251 NA coding upstream 215076 2825753 ~ 2828251 (-)
CI01000054_02840361_02849268 NA coding upstream 229155 2839832 ~ 2849268 (-)
CI01000054_02857402_02860451 NA coding upstream 246725 2857402 ~ 2860573 (-)
G230977 NA non-coding downstream 9740 2583331 ~ 2583820 (-)
G230965 NA non-coding downstream 39617 2553484 ~ 2553943 (-)
G230964 NA non-coding downstream 41917 2551427 ~ 2551643 (-)
G230963 NA non-coding downstream 43216 2549977 ~ 2550344 (-)
G230962 NA non-coding downstream 45651 2547694 ~ 2547909 (-)
G230978 NA non-coding upstream 2358 2613035 ~ 2615473 (-)
G230997 NA non-coding upstream 83532 2694209 ~ 2694438 (-)
G230999 NA non-coding upstream 84947 2695624 ~ 2695960 (-)
G230913 NA non-coding upstream 252723 2863400 ~ 2866640 (-)
G231001 NA non-coding upstream 306558 2917235 ~ 2917797 (-)
G230178 NA other downstream 1363425 1185533 ~ 1230135 (-)
G230923 NA other upstream 226560 2837237 ~ 2837682 (-)
G230908 NA other upstream 446971 3057648 ~ 3063343 (-)
G231645 NA other upstream 1371170 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 2059474 4670151 ~ 4681361 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014237 zgc:85777 coding NC_007130.7 CM002903.2 40861853 ~ 40898600 (+)