Gene
RNA
| Item | Value |
|---|---|
| gene id | G230964 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 2551427 ~ 2551643 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU262137 | True | 217 | lncRNA | 0.45 | 1 | 2551427 | 2551643 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_02529145_02537881 | COL1A2 | coding | downstream | 13546 | 2528905 ~ 2537881 (-) |
| CI01000054_02514735_02525669 | CASD1 | coding | downstream | 25758 | 2514659 ~ 2525669 (-) |
| CI01000054_02491166_02492438 | NA | coding | downstream | 58989 | 2491065 ~ 2492438 (-) |
| CI01000054_02486241_02489469 | NA | coding | downstream | 61733 | 2485602 ~ 2489694 (-) |
| CI01000054_02439354_02469735 | PPP1R9A | coding | downstream | 81692 | 2439354 ~ 2469735 (-) |
| CI01000054_02593560_02610677 | NA | coding | upstream | 41917 | 2593560 ~ 2610677 (-) |
| CI01000054_02611877_02612240 | GNGT1 | coding | upstream | 60029 | 2611672 ~ 2612394 (-) |
| CI01000054_02709494_02814598 | VPS50 | coding | upstream | 157846 | 2709489 ~ 2814900 (-) |
| CI01000054_02825786_02828251 | NA | coding | upstream | 274110 | 2825753 ~ 2828251 (-) |
| CI01000054_02840361_02849268 | NA | coding | upstream | 288189 | 2839832 ~ 2849268 (-) |
| G230963 | NA | non-coding | downstream | 1083 | 2549977 ~ 2550344 (-) |
| G230962 | NA | non-coding | downstream | 3518 | 2547694 ~ 2547909 (-) |
| G230961 | NA | non-coding | downstream | 4069 | 2547136 ~ 2547358 (-) |
| G230897 | NA | non-coding | downstream | 324322 | 2225164 ~ 2227105 (-) |
| G230888 | NA | non-coding | downstream | 428864 | 2122228 ~ 2122563 (-) |
| G230965 | NA | non-coding | upstream | 1841 | 2553484 ~ 2553943 (-) |
| G230977 | NA | non-coding | upstream | 31688 | 2583331 ~ 2583820 (-) |
| G230978 | NA | non-coding | upstream | 61392 | 2613035 ~ 2615473 (-) |
| G230997 | NA | non-coding | upstream | 142566 | 2694209 ~ 2694438 (-) |
| G230999 | NA | non-coding | upstream | 143981 | 2695624 ~ 2695960 (-) |
| G230178 | NA | other | downstream | 1321292 | 1185533 ~ 1230135 (-) |
| G230923 | NA | other | upstream | 285594 | 2837237 ~ 2837682 (-) |
| CI01000054_02857402_02860451 | NA | other | upstream | 302498 | 2857402 ~ 2860573 (-) |
| G230908 | NA | other | upstream | 506005 | 3057648 ~ 3063343 (-) |
| G231645 | NA | other | upstream | 1430204 | 3981847 ~ 3982823 (-) |
| CI01000054_04671351_04681181 | PEF1 | other | upstream | 2118508 | 4670151 ~ 4681361 (-) |
