XLOC_014330 (med30)


Basic Information

Item Value
gene id XLOC_014330
gene name med30
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46372115 ~ 46411358 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028455
GAATGACGTCTTGTCAACAACACAAAAACTAACGGCAGAAGACATGAGTGCCAGTGTATAGACAAGGATCTCAGGTGTGTTTCTCGATGACGACTCCTCCGCTGGCGCAGTTCTCtggccagcagcagcagcagactcAGGCCGCTCGGGATGTAAACACTGCATCTCTGTGTCGGATCGGTCAGGAGACGGTGCAGGACATCGTCTTGCGGACCATGGAGATCTTTCAGCTGCTCAGAAACATGCAGCTGCCGAACGGAGTGACGTATCATCCTAACACTCATCAGGACCGGCTGGGGAAGCTGCAGGAGCATTTGCGGACACTCTCGGTCCTCTTCCGAAAGCTCCGTCTCGTCTATGACAAATGCAATGAGAACTGCGCCGGTCTGGAGCCCATCCCTCCTGAGCAACTTATCCCGTATGTGGAGGATGACAGTTCAAAACTGGAGGACCGAATGGCCAATCAGCTGCGTGCAGCCAGTGAAGAAAGAAGAGAAGTGCTGGAGGTTAATAAGAAACTGAAACAGAAGAATCAGCAGCTGAAGATGATCATGGACCAGCTCAGGAACCTCATCTGGGAGATCAACTCCATGCTGGCGGTCAGGAGCtgagaacacacactcacacgtacAAACAATCTCTCTCCCACAAACTAATACACACAGGTATCAACGCATTAAAGAAGAAAAGGTATGAAGTGAAGAGAGGCTGAGCTGAGGAAACtctacatgcacacacacacacacacacacctcggcTTCAGCAGTGTTCAGTCTGATGAACATTAGAGGCTCGTTCACTCAGACACGCTTTCAAACGAAGCTTTTACGCAACTGTAGTCATCAGATTCTGCATGAGCGATAACAGATTCACTTTACTCTGCATTTCTCATTCAGAAATCTGTTGTGTGAGATGTAGAATGCATATTACTGtgctgttaatatatatatacacgtatttaaacaaacaacaaaaactc

Function

symbol description
med30 Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED30 (mediator complex subunit 30).

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko04919 Thyroid hormone signaling pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040426-1676 Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED30 (mediator complex subunit 30).

Ensembl:

ensembl_id ENSDARG00000101115

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028455 True 979 mRNA 0.48 5 46372115 46411358

Neighbor

gene id symbol gene type direction distance location
XLOC_014329 slc30a8 coding upstream 9883 46343385 ~ 46362232 (+)
XLOC_014328 rprd1a coding upstream 38305 46309553 ~ 46333810 (+)
XLOC_014327 mapk15 coding upstream 68493 46240171 ~ 46303622 (+)
XLOC_014326 vps28 coding upstream 133491 46222428 ~ 46238624 (+)
XLOC_014325 NA coding upstream 153075 46216335 ~ 46219040 (+)
XLOC_014331 NA coding downstream 11733 46423091 ~ 46438135 (+)
XLOC_014332 AL953858.1 coding downstream 413365 46824723 ~ 46825683 (+)
XLOC_014333 si:ch211-229b6.1 coding downstream 724319 47135677 ~ 47137425 (+)
XLOC_014334 NA coding downstream 777172 47188530 ~ 47191501 (+)
XLOC_014335 tpmt.1 coding downstream 878929 47290287 ~ 47298657 (+)
XLOC_014321 NA non-coding upstream 278463 46091317 ~ 46093652 (+)
XLOC_014317 NA non-coding upstream 644053 45727214 ~ 45728062 (+)
XLOC_014316 CT737154.1 non-coding upstream 863134 45508865 ~ 45508981 (+)
XLOC_014315 NA non-coding upstream 1006388 45359277 ~ 45365727 (+)
XLOC_014337 CU138512.1 non-coding downstream 895265 47306623 ~ 47306738 (+)
XLOC_014339 NA non-coding downstream 926224 47337582 ~ 47338157 (+)
XLOC_014341 NA non-coding downstream 1026846 47438204 ~ 47448594 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000096_00319871_00330714 MED30 coding CI01000096 null 319479 ~ 331008 (+)