XLOC_014352 (UBE2M)


Basic Information

Item Value
gene id XLOC_014352
gene name UBE2M
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 48018464 ~ 48023442 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028475
CCGCCGGTGCCCTACCCAAAACATCCGCTTTCAGTATCACCGCAGATTTATGATAAAACTGACACAATTATATAATAgctgttattaaaaaaacattcatcTTGACAACAACAACACTATCAACAATAAGAAGATTTATTAACTTTAAAGTATAAGTTTGCGGTTTCTGTCTAGTTAATTGTGTTCTGAAATCAGCTGAAAGAACAGTGTGTGAACAGAGCTAGCATTTGCggctaacacacacactcacacagggagagagagagagagagagagagactgactcACACACACCGGCTCCCTCTACAGCTGCTgtgaaacacactcacacacacacacacacacactctctctccctCAGAGCGCAGCTCCCGAACACACCGCGCTGTTTGCTCTGCAGAGGCCGAAGATGATCAAGCTTTTCTCGCTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCCGGCGGGCCGCGCGCGGGGGGCGGCGGGAAGAAGGCGAGCGCGGCCCAGCTGCGGATACAGAAGgACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGGTTTCTATAAAGGAGGGAAGTTCGTCTTCAGTTTTAAGGTAGGGCAGGGTTATCCGCACGACCCCCCCAAAGTCAAGTGTGAAACGATGGTTTATCACCCCAACATTGACCTGGAGGGAAACGTCTGTCTAAATATACTGAGAGAAGACTGGAAACCGGTGCTGACCATTAACTCCATCATATACGGACTACAGTACCTGTTCCTCGAGCCCAATCCTGAAGACCCGCTGAATAAAGAGGCAGCAGAGGTTCTGCAGACGAACCGGCGACTCTTCGAGCAGAACGTCCAGCGGTCGCTGCGGGGCGGATACGTGGGCGCCACCTACTTCGAGCGCTGCCTGAAATAGTCCCGCGCCCGCCGGCCCTCACGTCCGAGAATGCATTTATCGTTTACATGCGCTGAGATGTACTGACCGACACACTGACCGCTCTCGGGTGTGCGGGACGGTGGCGAGCGTTCACAGGCTGGTCAGTGGTTGTTGCTCAGAGAATTCAGTCGTATTTCGCCACTATGCTGGtacccactgtttattttttgctgagATTCACATGCTAACTCATCCTCCACTCAACATGAGCGTGCGCggggcagacacacacacacacacacacacacacacacacacactcacacacacttctcTATTCCATCACCCAGCTTGAGGACTGATTGGTTTGGGCTTGAGACGGCCGCTGCCCCGCGC
>TCONS_00028476
GGTGCCCTACCCAAAACATCCGCTTTCAGTATCACCGCAGATTTATGATAAAACTGACACAATTATATAATAgctgttattaaaaaaacattcatcTTGACAACAACAACACTATCAACAATAAGAAGATTTATTAACTTTAAAGTATAAGTTTGCGGTTTCTGTCTAGTTAATTGTGTTCTGAAATCAGCTGAAAGAACAGTGTGTGAACAGAGCTAGCATTTGCggctaacacacacactcacacagggagagagagagagagagagagagactgactcACACACACCGGCTCCCTCTACAGCTGCTgtgaaacacactcacacacacacacacacacactctctctccctCAGAGCGCAGCTCCCGAACACACCGCGCTGTTTGCTCTGCAGAGGCCGAAGATGATCAAGCTTTTCTCGCTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCCGGCGGGCCGCGCGCGGGGGGCGGCGGGAAGAAGGCGAGCGCGGCCCAGCTGCGGATACAGAAGgACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGTAGGGCAGGGTTATCCGCACGACCCCCCCAAAGTCAAGTGTGAAACGATGGTTTATCACCCCAACATTGACCTGGAGGGAAACGTCTGTCTAAATATACTGAGAGAAGACTGGAAACCGGTGCTGACCATTAACTCCATCATATACGGACTACAGTACCTGTTCCTCGAGCCCAATCCTGAAGACCCGCTGAATAAAGAGGCAGCAGAGGTTCTGCAGACGAACCGGCGACTCTTCGAGCAGAACGTCCAGCGGTCGCTGCGGGGCGGATACGTGGGCGCCACCTACTTCGAGCGCTGCCTGAAATAGTCCCGCGCCCGCCGGCCCTCACGTCCGAGAATGCATTTATCGTTTACATGCGCTGAGATGTACTGACCGACACACTGACCGCTCTCGGGTGTGCGGGACGGTGGCGAGCGTTCACAGGCTGGTCAGTGGTTGTTGCTCAGAGAATTCAGTCGTATTTCGCCACTATGCTGGtacccactgtttatt
>TCONS_00028477
ctgactcACACACACCGGCTCCCTCTACAGCTGCTgtgaaacacactcacacacacacacacacacactctctctccctCAGAGCGCAGCTCCCGAACACACCGCGCTGTTTGCTCTGCAGAGGCCGAAGATGATCAAGCTTTTCTCGCTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCCGGCGGGCCGCGCGCGGGGGGCGGCGGGAAGAAGGCGAGCGCGGCCCAGCTGCGGATACAGAAGgACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGGTTTCTATAAAGGAGGGAAGTTCGTCTTCAGTTTTAAGGTGAGCAGCAGAGGGGCGAGCGGCGCGTCCGTGTCCAGCTCTCTCCAGTGTGCTGTCGCCGCTGCACTCACACTGTTCTGCTTGTTTCTGTAGTGTTCTGATCTGTATGTGAGTGATGTTGTGAAACTTCCGTGCGCTGATCTCTGCCGTTGTGGGAAGGTTTTTCTGA
>TCONS_00028478
cacacacactctctctccctCAGAGCGCAGCTCCCGAACACACCGCGCTGTTTGCTCTGCAGAGGCCGAAGATGATCAAGCTTTTCTCGCTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCCGGCGGGCCGCGCGCGGGGGGCGGCGGGAAGAAGGCGAGCGCGGCCCAGCTGCGGATACAGAAGgACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGGTTTCTATAAAGGAGGGAAGTTCGTCTTCAGTTTTAAGGTAGGGCAGGGTTATCCGCACGACCCCCCCAAAGTCAAGTGTGAAACGATGGTTTATCACCCCAACATTGACCTGGAGGGAAACGTCTGTCTAAATATACTGAGACTGGAAACCGGTGCTGACCATTAACTCCATCATATACGGACTACAGTACCTGTTCCTCGAGCCCAATCCTGAAGACCCGCTGAATAAAGAGGCAGCAGAGGTTCTGCAGACGAACCGGCGACTCTTCGAGCAGAACGTCCAGCGGTCGCTGCGGGGCGGATACGTGGGCGCCACCTACTTCGAGCGCTGCCTGAAATAGTCCCGCGCCCGCCGGCCCTCACGTCCGAGAATGCATTTATCGTTTACATGCGCTGAGATGTACTGACCGACACACTGACCGCTCTCGGGTGTGCGGGACGGTGGCGAGCGTTCACAGGCTGGTCAGTGGTTGTTGCTCAGAGAATTCAGTCGTATTTCGCCACTATGCTGGtacccactgtttattttttgctgagATTCACATGCTAACTCATCCTCCACTCAACATGAGCGTGCGCg
>TCONS_00028479
cacactctctctccctCAGAGCGCAGCTCCCGAACACACCGCGCTGTTTGCTCTGCAGAGGCCGAAGATGATCAAGCTTTTCTCGCTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCCGGCGGGCCGCGCGCGGGGGGCGGCGGGAAGAAGGCGAGCGCGGCCCAGCTGCGGATACAGAAGgACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGGTTTCTATAAAGGAGGGAAGTTCGTCTTCAGTTTTAAGGGCAGGGTTATCCGCACGACCCCCCCAAAGTCAAGTGTGAAACGATGGTTTATCACCCCAACATTGACCTGGAGGGAAACGTCTGTCTAAATATACTGAGAGAAGACTGGAAACCGGTGCTGACCATTAACTCCATCATATACGGACTACAGTACCTGTTCCTCGAGCCCAATCCTGAAGACCCGCTGAATAAAGAGGCAGCAGAGGTTCTGCAGACGAACCGGCGACTCTTCGAGCAGAACGTCCAGCGGTCGCTGCGGGGCGGATACGTGGGCGCCACCTACTTCGAGCGCTGCCTGAAATAGTCCCGCGCCCGCCGGCCCTCACGTCCGAGAATGCATTTATCGTTTACATGCGCTGAGATGTACTGACCGACACACTGACCGCTCTCGGGTGTGCGGGACGGTGGCGAGCGTTCACAGGCTGGTCAGTGGTTGTTGCTCAGAGAATTCAGTCGTATTTCGCCACTATGCTGGtacccactgtttattttttgctgagATTCACATGCTAACTCATCCTCCACTCAACATGAGCGTGCGCggggcagacacacacacacacacacacacacacacacacacactcacacacacttctcTATTCCATCACCCAGCTTGAGGACTGA
>TCONS_00028480
CAGCTCCCGAACACACCGCGCTGTTTGCTCTGCAGAGGCCGAAGATGATCAAGCTTTTCTCGCTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCCGGCGGGCCGCGCGCGGGGGGCGGCGGGAAGAAGGCGAGCGCGGCCCAGCTGCGGATACAGAAGgACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGGTTTCTATAAAGGAGGGAAGTTCGTCTTCAGTTTTAAGGTAGGGCAGGGTTATCCGCACGACCCCCCCAAAGTCAAGTGTGAAACGATGGTTTATCACCCCAACATTGACCTGGAGGGAAACGTCTGTCTAAATATACTGAGGTATggtgtgcagctttacactgttGCTCATCTCCATCTTCTTCCAGCTGAACACATTCATCTCTTAATGCTCAGGCTGTTTCTACATGCATCTctcatttctctttgctatttgggcttattggaagcTGATTAGAATAAAACGTGAGGATCATCTTCTGATAAGATGTACTTTTAGAGGAAAGTGATGTTCATATATGTGGACTGAATGTACATAAACACTGTTTCCTGCCTGTCtgtaatgcatatttaatatAGGAatattttgaacatgttttgactatcagagagtgaAATCAACATTTTTGCCCATTATGGACGGTTAAAACAGTGTTTGGGACACGTCATATGCTGCAGAACAGTTGCAGGATGATTCTGTGTGTCTGTAA
>TCONS_00028481
CACCGCGCTGTTTGCTCTGCAGAGGCCGAAGATGATCAAGCTTTTCTCGCTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCCGGCGGGCCGCGCGCGGGGGGCGGCGGGAAGAAGGCGAGCGCGGCCCAGCTGCGGATACAGAAGgACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGGTTTCTATAAAGGAGGGAAGTTCGTCTTCAGTTTTAAGGAGCCCAATCCTGAAGACCCGCTGAATAAAGAGGCAGCAGAGGTTCTGCAGACGAACCGGCGACTCTTCGAGCAGAACGTCCAGCGGTCGCTGCGGGGCGGATACGTGGGCGCCACCTACTTCGAGCGCTGCCTGAAATAGTCCCGCGCCCGCCGGCCCTCACGTCCGAGAATGCATTTATCGTTTACATGCGCTGAGATGTACTGACCGACACACTGACCGCTCTCGGGTGTGCGGGACGGTGGCGAGCGTTCACAGGCTGGTCAGTGGTTGTTGCTCAGAGAATTCAGTCGTATTTCGCCACTATGCTGGtacccactgtttattttttgctgagATTCACATGCTAACTCATCCTCCACTCAACATGAGCGTGCGCggggcagacacacacacacacacacacacacacacacacacactcacacacacttctcTATTCCATCACCCAGCTTGAGGACTGATTGGTTTGGGCTTGAGACGGCCGCTG
>TCONS_00028482
ACAGCCGCGGGGCCGCCGACCGGGTCGCTGAGGAGAAACAGCGATAGCGTTAGCATTAGCCGCGCGCTAACAACATCCGGCGCTCCTCGGAGATTCTGGcccataaaacaagacaaaacagacAGTTTAGACATTCACAGTCCGAGCAGGAGGAGAACACCGATCAACCGTCGAGCTGCGCGGACAACTCTGCGTTTCTGCCCGCGGAGAGACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGGTTTCTATAAAGGAGGGAAGTTCGTCTTCAGTTTTAAGGTAGGGCAGGGTTATCCGCACGACCCCCCCAAAGTCAAGTGTGAAACGATGGTTTATCACCCCAACATTGACCTGGAGGGAAACGTCTGTCTAAATATACTGAGAGAAGACTGGAAACCGGTGCTGACCATTAACTCCATCATATACGGACTACAGTACCTGTTCCTCGAGCCCAATCCTGAAGACCCGCTGAATAAAGAGGCAGCAGAGGTTCTGCAGACGAACCGGCGACTCTTCGAGCAGAACGTCCAGCGGTCGCTGCGGGGCGGATACGTGGGCGCCACCTACTTCGAGCGCTGCCTGAAATAGTCCCGCGCCCGCCGGCCCTCACGTCCGAGAATGCATTTATCGTTTACATGCGCTGAGATGTACTGACCGACACACTGACCGCTCTCGGGTGTGCGGGACGGTGGCGAGCGTTCACAGGCTGGTCAGTGGTTGTTGCTCAGAGAATTCAGTCGTATTTCGCCACTATGCTGGtacccactgtttattttttgctgagATTCACATGCTAACTCATCCTCCACTCAACATGAGCGTGCGCggggcagacacacacacacacacac

Function

symbol description
ube2m Enables NEDD8 transferase activity and ubiquitin-protein transferase activity. Involved in protein neddylation. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus.

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDARG00000101521

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028475 False 1324 mRNA 0.52 6 48018464 48023442
TCONS_00028476 False 1109 mRNA 0.52 5 48018469 48023271
TCONS_00028477 False 548 lncRNA 0.57 3 48018743 48021067
TCONS_00028478 False 863 mRNA 0.56 6 48018802 48023324
TCONS_00028479 False 944 nonsense_mediated_decay 0.55 6 48018806 48023408
TCONS_00028480 False 786 lncRNA 0.47 4 48018829 48021576
TCONS_00028481 False 770 mRNA 0.57 4 48018842 48023434
TCONS_00028482 True 917 mRNA 0.55 6 48019070 48023348

Neighbor

gene id symbol gene type direction distance location
XLOC_014351 CU929079.1 coding upstream 118 48018006 ~ 48018346 (+)
XLOC_014350 NA coding upstream 90653 47924670 ~ 47927811 (+)
XLOC_014349 NA coding upstream 100910 47907150 ~ 47917554 (+)
XLOC_014348 CABZ01005379.1 coding upstream 174812 47838603 ~ 47843652 (+)
XLOC_014347 NA coding upstream 217653 47797889 ~ 47800811 (+)
XLOC_014353 kpnb1 coding downstream 1015 48024457 ~ 48037702 (+)
XLOC_014354 CU929079.2 coding downstream 9857 48033299 ~ 48033440 (+)
XLOC_014355 psmd3 coding downstream 25760 48049202 ~ 48059334 (+)
XLOC_014356 zgc:85936 coding downstream 37022 48060464 ~ 48069778 (+)
XLOC_014357 utp18 coding downstream 79118 48102560 ~ 48104715 (+)
XLOC_014362 NA non-coding downstream 163739 48187181 ~ 48191116 (+)
XLOC_014364 NA non-coding downstream 267305 48290747 ~ 48308400 (+)
XLOC_014366 NA non-coding downstream 343010 48366452 ~ 48367654 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000223_00467276_00471654 UBC12, UBE2M coding CI01000223 null 466773 ~ 472398 (+)