RNA id: TCONS_00028479


Basic Information

Item Value
RNA id TCONS_00028479
length 944
RNA type nonsense_mediated_decay
GC content 0.55
exon number 6
gene id XLOC_014352
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 48018464 ~ 48023442 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacactctctctccctCAGAGCGCAGCTCCCGAACACACCGCGCTGTTTGCTCTGCAGAGGCCGAAGATGATCAAGCTTTTCTCGCTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCCGGCGGGCCGCGCGCGGGGGGCGGCGGGAAGAAGGCGAGCGCGGCCCAGCTGCGGATACAGAAGgACATCAATGAGCTGAACCTCCCGAAGACCTGCGAGATCGTCTTTCCAGACCAGGACGACCTGCTGAACTTTAAGCTCATCATCTCTCCAGACGAGGGTTTCTATAAAGGAGGGAAGTTCGTCTTCAGTTTTAAGGGCAGGGTTATCCGCACGACCCCCCCAAAGTCAAGTGTGAAACGATGGTTTATCACCCCAACATTGACCTGGAGGGAAACGTCTGTCTAAATATACTGAGAGAAGACTGGAAACCGGTGCTGACCATTAACTCCATCATATACGGACTACAGTACCTGTTCCTCGAGCCCAATCCTGAAGACCCGCTGAATAAAGAGGCAGCAGAGGTTCTGCAGACGAACCGGCGACTCTTCGAGCAGAACGTCCAGCGGTCGCTGCGGGGCGGATACGTGGGCGCCACCTACTTCGAGCGCTGCCTGAAATAGTCCCGCGCCCGCCGGCCCTCACGTCCGAGAATGCATTTATCGTTTACATGCGCTGAGATGTACTGACCGACACACTGACCGCTCTCGGGTGTGCGGGACGGTGGCGAGCGTTCACAGGCTGGTCAGTGGTTGTTGCTCAGAGAATTCAGTCGTATTTCGCCACTATGCTGGtacccactgtttattttttgctgagATTCACATGCTAACTCATCCTCCACTCAACATGAGCGTGCGCggggcagacacacacacacacacacacacacacacacacacactcacacacacttctcTATTCCATCACCCAGCTTGAGGACTGA

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDART00000159750

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029741 lncRNA upstream 90995 47924670 ~ 47927811 (+) False XLOC_014350
TCONS_00029740 lncRNA upstream 90995 47924670 ~ 47927811 (+) True XLOC_014350
TCONS_00028473 lncRNA upstream 101252 47909148 ~ 47917554 (+) True XLOC_014349
TCONS_00029739 lncRNA upstream 101867 47907150 ~ 47916939 (+) False XLOC_014349
TCONS_00028472 lncRNA upstream 175154 47838603 ~ 47843652 (+) True XLOC_014348
TCONS_00030054 lncRNA downstream 163773 48187181 ~ 48191116 (+) False XLOC_014362
TCONS_00030056 lncRNA downstream 163774 48187182 ~ 48191116 (+) False XLOC_014362
TCONS_00030055 lncRNA downstream 163774 48187182 ~ 48191116 (+) False XLOC_014362
TCONS_00030058 lncRNA downstream 163776 48187184 ~ 48191116 (+) False XLOC_014362
TCONS_00030057 lncRNA downstream 163776 48187184 ~ 48191116 (+) False XLOC_014362
TCONS_00028471 mRNA upstream 231531 47783137 ~ 47787275 (+) True XLOC_014346
TCONS_00028469 mRNA upstream 495504 47502581 ~ 47523302 (+) True XLOC_014343
TCONS_00028468 mRNA upstream 537188 47476908 ~ 47481618 (+) True XLOC_014342
TCONS_00028465 mRNA upstream 595178 47394270 ~ 47423628 (+) False XLOC_014340
TCONS_00028483 mRNA downstream 1049 48024457 ~ 48037702 (+) True XLOC_014353
TCONS_00028485 mRNA downstream 25794 48049202 ~ 48059334 (+) True XLOC_014355
TCONS_00028486 mRNA downstream 37056 48060464 ~ 48069778 (+) True XLOC_014356
TCONS_00028487 mRNA downstream 79152 48102560 ~ 48104715 (+) True XLOC_014357
TCONS_00028488 mRNA downstream 87877 48111285 ~ 48114444 (+) True XLOC_014358
TCONS_00028474 other upstream 460 48018006 ~ 48018346 (+) True XLOC_014351
TCONS_00028470 other upstream 443983 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028459 other upstream 709423 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other upstream 712068 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028450 other upstream 1737875 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028484 other downstream 9891 48033299 ~ 48033440 (+) True XLOC_014354

Expression Profile

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