XLOC_001447 (tcirg1a)


Basic Information

Item Value
gene id XLOC_001447
gene name tcirg1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44870880 ~ 44901163 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002369
ATGGGATGCCTCTTTCGAAGTGAGGAGATGTGTCTGGTCCAGATCTTTCTACAGGCTGGTTCAGCTTACAACTGCGTCAGTGAGCTTGGGGAGCTGGGTTTAGTCGAATTCAGAGATttgaaTCCAAATGTGAACGCATTTCAGAAGAAGTTTGTGTCAGAAGTCAGAAGATGCGAAGAGCTGGAGAAAACCTTCAAATATCTGGAGCAAGAGATCAGTCGTTCTCTCTATCCTCCTCTGAAAGGAGCTCTACCCACCGCCAGCCCAATCCCATCAGCCCCACAGCCCAGAGAGCTGCTCTGCATCGAGGAGGAGAGCGAACGACTGGCCAGAGAGCTCAGAGAGGTGTCCAGGAACAGGGACAGTCTTCGTAACCAGCTGACCCAGCTCAGCCAGTACAGAGGGGTCCTGAAGCAGAGCATTTTACTACCAACCTCACAGGTTCCACCTCTGACTCTTGAGACATCAGCATTACTGGACAGCAGGCAAGATATGCGTTTGAGTTTTGTTGCTGGTGTGGTCCATCCGTGGAAGGTGCCAGCGTTTGAGAGGCTGCTGTGGCGGGCCTGTCGTGGATACATCATTGTAGACTTCTGGGAGATGGAGGAAAGGCTGGAGGAGCCAGACACTGGAGAGACGATTCAGTGGACTGTCTTTGTGATCTCTTTTTGGGGGGAGCAGATTGGACAAAAAGTGAAGAAGATCTGCGATTGTTTCCGCACACATACCTTTGTGTATCCGGAAGGATTGGAGGAGAGGGAAGGAATACTCCAGGGGCTGGAAAGCAGAATAGTGGACATCAGAACAGTGCTGTCTCAGACGGAGCAGTATATGCAGCAGCTGCTGTCCCGCTGTGTGTGTCAGATGCCACAGTGGAAGATACGTGTGCAGAAGTGTAAAGCTGTGCAGATGGTCCTTAATCTGTGCAGCCCTTCAGTCACAGACAAGTGTCTGATTGCTGAGGCCTGGTGTCCCGTGGCCAAACTGCTTCTGCTCCAGAGCGCTCTGATGGAGGGAACGAGAAAGAGCGGTAGCAGTGTCGATTCTTTCTACAACCGTTTACCAGCACCCACATCTCCTCCAACACTCTTTGAAACCAACGCTTTCACTTCCAGCTTCCAAAACATTGTGGATGCTTACGGTGTAGCCAGTTACAGAGAAGTTAATCCGGCTGTGTACACCATTATCACTTTCCCCTTTCTGTTTGCGGTCATGTTTGGAGATGTTGGTCATGGTTTACTCATGACATTGGCTGCCCTGTGGATGATTCTAGAGGAAAGAGACCCCAAGATGAGGACTAGCACTAATGAGATCTGGCGTATGCTGTTTGGCGGGAGGTATCTGATCCTCATGATGGGGTTGTTCTCCATCTACACTGGGGCTATTTATAATGAGTGCTTCAGTAAAGGACTCAGTCCTGTTTCCTCTGGCTGGCACCTCAAACCCATGATTCAGCATTACAACTGGAGTGATGAAACTTTGAGGAGCAACCAGTACCTCACGTTGGATCCTAATATAACTGGAGTATTCCAGGGACCATATCCATTCGGCATTGACCCGATCTGGAGTCTTGCCAATAACCACCTCACCTTCCTCAATTCCTACAAGATGAAGATGTCTGTGATCATCGGGGTCATCCACATGACGTTCGGGGTCTGCTTATCCTTCTTTAACTACATgtactTTGGGAACGTGAGCAGTGTGTTCCTGGTGTTGATTCCTGAGTTAGTGTTCATGTTGTGTCTTTTCGGGTACCTGGTCTTCATGGTGGTGTTTAAATGGATTGCGTTTGGACCTCAGGATTCAGACCGTGCTCCCAGCATACTGATCCACTTCATTGACATGTTCCTGTTCTCCGAGAATCCAAGCAACCCACCACTTTATCCTAGACAGATGACAGTGCAGAGGATATTAGTGTGTTTGGCTCTACTAGCGGTTCCAGTGCTGTTACTGGGAAAACCACTTCAGCTCTACTTCCAGCATAGGAACAGCAGGAGAACGCTACATGAGGAGCAGCGTTCTCTAGTCACAGACACCAGCTCAATAAATGCACAACTAGTTGACCTAGAGGGAGGAGGAGGAATAGATGAACAGGAGTTTGAGTGGACGGAGGTGTTCATGCAGCAGGCCATCCATACTATAGAGTACTGTCTGGGCTGCATCTCTAACACTGCCTCATACCTCCGCCTTTGGGCCCTCAGCCTCGCTCATGCACaGCTGGCGGAAGTCCTCTGGGTGATGGTAATGAGGATTTCCTTGTCGTGGCAAGGCTATGTTGGCTCTGTGGTTCTGTCAGTGGTTTTCTCCCTCTTCGCCACGCTCACCGTCTCCATCCTGCTGGTTATGGAGGGACTGTCGGCCTTCCTGCATGCACTGCGGCTGCACTgGGTGGAGTTTCAGAATAAATTCTACCGCGGATCTGGATACAAGTTCAACCCTTTCTCCTTTGAATCAATCCAcagtcattaa
>TCONS_00002370
TACCAGATATTGTCTAAAAAACTAGCATGCGCTATACTGTTTTCAATGGGGTTTAGAGGTAGTGTGTTTTTGCGCGCTGCAGCAGGTTTACAGTCAGTGTCTGAATCACATGGCATTGACTGAGCTAAAGTAATGAGCGGCCACGAGCTCATGCTGTTTACATCGCAACACCTCAGAAGAACACTACCGACCATGAGATCAAATTGTGGATAATCTTTCTTCTATCGACTTGGATTTATCGACGATTGTCTCCAGCTAAAGGCTAACATGGGATGCCTCTTTCGAAGTGAGGAGATGTGTCTGGTCCAGATCTTTCTACAGGCTGGTTCAGCTTACAACTGCGTCAGTGAGCTTGGGGAGCTGGGTTTAGTCGAATTCAGAGATttgaaTCCAAATGTGAACGCATTTCAGAAGAAGTTTGTGTCAGAAGTCAGAAGATGCGAAGAGCTGGAGAAAACCTTCAAATATCTGGAGCAAGAGATCAGTCGTTCTCTCTATCCTCCTCTGAAAGGAGCTCTACCCACCGCCAGCCCAATCCCATCAGCCCCACAGCCCAGAGAGCTGCTCTGCATCGAGGAGGAGAGCGAACGACTGGCCAGAGAGCTCAGAGAGGTGTCCAGGAACAGGGACAGTCTTCGTAACCAGCTGACCCAGCTCAGCCAGTACAGAGGGGTCCTGAAGCAGAGCATTTTACTACCAACCTCACAGGTTCCACCTCTGACTCTTGAGACATCAGCATTACTGGACAGCAGGCAAGATATGCGTTTGAGTTTTGTTGCTGGTGTGGTCCATCCGTGGAAGGTGCCAGCGTTTGAGAGGCTGCTGTGGCGGGCCTGTCGTGGATACATCATTGTAGACTTCTGGGAGATGGAGGAAAGGCTGGAGGAGCCAGACACTGGAGAGACGATTCAGTGGACTGTCTTTGTGATCTCTTTTTGGGGGGAGCAGATTGGACAAAAAGTGAAGAAGATCTGCGATTGTTTCCGCACACATACCTTTGTGTATCCGGAAGGATTGGAGGAGAGGGAAGGAATACTCCAGGGGCTGGAAAGCAGAATAGTGGACATCAGAACAGTGCTGTCTCAGACGGAGCAGTATATGCAGCAGCTGCTGTCCCGCTGTGTGTGTCAGATGCCACAGTGGAAGATACGTGTGCAGAAGTGTAAAGCTGTGCAGATGGTCCTTAATCTGTGCAGCCCTTCAGTCACAGACAAGTGTCTGATTGCTGAGGCCTGGTGTCCCGTGGCCAAACTGCTTCTGCTCCAGAGCGCTCTGATGGAGGGAACGAGAAAGAGCGGTAGCAGTGTCGATTCTTTCTACAACCGTTTACCAGCACCCACATCTCCTCCAACACTCTTTGAAACCAACGCTTTCACTTCCAGCTTCCAAAACATTGTGGATGCTTACGGTGTAGCCAGTTACAGAGAAGTTAATCCGGCTGTGTACACCATTATCACTTTCCCCTTTCTGTTTGCGGTCATGTTTGGAGATGTTGGTCATGGTTTACTCATGACATTGGCTGCCCTGTGGATGATTCTAGAGGAAAGAGACCCCAAGATGAGGACTAGCACTAATGAGATCTGGCGTATGCTGTTTGGCGGGAGGTATCTGATCCTCATGATGGGGTTGTTCTCCATCTACACTGGGGCTATTTATAATGAGTGCTTCAGTAAAGGACTCAGTCCTGTTTCCTCTGGCTGGCACCTCAAACCCATGATTCAGCATTACAACTGGAGTGATGAAACTTTGAGGAGCAACCAGTACCTCACGTTGGATCCTAATATAACTGGAGTATTCCAGGGACCATATCCATTCGGCATTGACCCGATCTGGAGTCTTGCCAATAACCACCTCACCTTCCTCAATTCCTACAAGATGAAGATGTCTGTGATCATCGGGGTCATCCACATGACGTTCGGGGTCTGCTTATCCTTCTTTAACTACATgtactTTGGGAACGTGAGCAGTGTGTTCCTGGTGTTGATTCCTGAGTTAGTGTTCATGTTGTGTCTTTTCGGGTACCTGGTCTTCATGGTGGTGTTTAAATGGATTGCGTTTGGACCTCAGGATTCAGACCGTGCTCCCAGCATACTGATCCACTTCATTGACATGTTCCTGTTCTCCGAGAATCCAAGCAACCCACCACTTTATCCTAGACAGATGACAGTGCAGAGGATATTAGTGTGTTTGGCTCTACTAGCGGTTCCAGTGCTGTTACTGGGAAAACCACTTCAGCTCTACTTCCAGCATAGGAACAGCAGGAGAACGCTACATGAGGAGCAGCGTTCTCTAGTCACAGACACCAGCTCAATAAATGCACAACTAGTTGACCTAGAGGGAGGAGGAGGAATAGATGAACAGGAGTTTGAGTGGACGGAGGTGTTCATGCAGCAGGCCATCCATACTATAGAGTACTGTCTGGGCTGCATCTCTAACACTGCCTCATACCTCCGCCTTTGGGCCCTCAGCCTCGCTCATGCACaGCTGGCGGAAGTCCTCTGGGTGATGGTAATGAGGATTTCCTTGTCGTGGCAAGGCTATGTTGGCTCTGTGGTTCTGTCAGTGGTTTTCTCCCTCTTCGCCACGCTCACCGTCTCCATCCTGCTGGTTATGGAGGGACTGTCGGCCTTCCTGCATGCACTGCGGCTGCACTgGGTGGAGTTTCAGAATAAATTCTACCGCGGATCTGGATACAAGTTCAACCCTTTCTCCTTTGAATCAATCCAGCGTTTGGAGTGAATGTAAATACTACATGTAAAGATGCTTTTATACTTCATTTTGAAGCTGAATGTGTTTCTCAAGTATTAAAAAGCAATCAAATGGATAGTTCATCCTAAATTAAAAACGAAAAAGTATTCCAAACCGGTGAAGTTTGttgtaatataacaaaataagcTGTTTTGAtgctgtccaaagacatgcgctgtaggcgaattgaataagctaaattggccgcagtgtatgtgtgtgaatcagtgtgtatggatgtttccgagtGTTGGATTGCAACTTGTAAGGCATCTGCAACATACgtttcaaaatgaatgaatggtgatgttttgagaaatgttCATTTAACACAGTCAATACACGTCACCACatgaggatttttttattttaagttgaactgtcccttttattatttatttggtcTCAGGGTTTGTTTTATAAGCTTCCTGAGGACTTAATGCTGAGCATATGATGTATGGATTACAAAGATAATACTAATAAAGCTTTTAACTAAGAAATTTGTGAATTATTGTATTCCTTTCAAAATAAAGACAAATGGACTCTTAGGGGCCGATCACTCCGAACGTGCTTTTACGTTTCATgaggcgc

Function

symbol description
tcirg1a Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 1. Orthologous to human TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0007035 vacuolar acidification biological_process
GO:0006811 ion transport biological_process
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0051117 ATPase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-31 Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 1. Orthologous to human TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3).

Ensembl:

ensembl_id ENSDARG00000016835

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002369 False 2469 mRNA 0.50 21 44870880 44899287
TCONS_00002370 True 3339 mRNA 0.47 21 44872208 44901163

Neighbor

gene id symbol gene type direction distance location
XLOC_001446 si:dkey-9i23.8 coding downstream 58866 44802794 ~ 44812014 (-)
XLOC_001445 si:dkey-9i23.6 coding downstream 74349 44784793 ~ 44796531 (-)
XLOC_001444 si:dkey-28b4.7 coding downstream 159943 44707054 ~ 44710937 (-)
XLOC_001443 si:dkey-28b4.8 coding downstream 166619 44651727 ~ 44704261 (-)
XLOC_001442 slc43a1b coding downstream 232822 44591492 ~ 44638058 (-)
XLOC_001448 si:dkey-9i23.15 coding upstream 24259 44925422 ~ 44928987 (-)
XLOC_001449 si:dkey-9i23.14 coding upstream 29294 44930457 ~ 44933094 (-)
XLOC_001450 tmem176 coding upstream 34279 44935442 ~ 44940953 (-)
XLOC_001451 smu1b coding upstream 111228 45012391 ~ 45042210 (-)
XLOC_001452 rps6 coding upstream 142604 45043767 ~ 45049603 (-)
XLOC_001440 BX908740.2 non-coding downstream 334662 44534625 ~ 44536218 (-)
XLOC_001427 CR385050.3 non-coding downstream 917253 43952298 ~ 43953627 (-)
XLOC_001417 NA non-coding downstream 1253711 43518209 ~ 43617169 (-)
XLOC_001416 NA non-coding downstream 1715427 43130890 ~ 43155453 (-)
XLOC_001415 CR925858.1 non-coding downstream 1896005 42974760 ~ 42974875 (-)
XLOC_001453 NA non-coding upstream 191781 45092944 ~ 45096173 (-)
XLOC_001458 LO017716.1 non-coding upstream 405998 45307161 ~ 45313876 (-)
XLOC_001464 NA non-coding upstream 737969 45639132 ~ 45647846 (-)
XLOC_001466 NA non-coding upstream 795671 45696834 ~ 45700570 (-)
XLOC_001468 NA non-coding upstream 931612 45832775 ~ 45837990 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_07735779_07751747 TCIRG1A coding CI01000049 null 7735779 ~ 7751747 (+)