XLOC_001448 (si:dkey-9i23.15)


Basic Information

Item Value
gene id XLOC_001448
gene name si:dkey-9i23.15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44925422 ~ 44928987 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002371
CAGCAGGCGGCAGAATTGCTCTTTGCAGGAAGAGGAGAGGAAGCGGGCGTTGCTCAgggaaatgaaatattttatggatCACTAAACGTCcagtttatttgagttttggtAAACACCGAGCTTATTTGCGAATAGTACATCTGGCATTCTTTGTAGGATAGTTTCTATATAATATAACGTGTTAAGAGCAGTTTTCTAATCCCCAAGTAAAGAAGCCTGAATGCAGCGTTTTCACTCCTTCCATGTTGTCCGTGCGGTTGTTTTGGATTAGCTTGTTTAACTCACGAACACAGGTTTAACTTCTCTACCGACGCGATATACGCCTTGTGAAAattaaaatggtacaatgtttCTATTTCACCACACTTCTACTTTCAGTATCACTTCAGTTTATACCATTGTGTCAGTCGGTCGAATGGAAAAACCACTCTGGTCCACTTCAAAATGCGCGGTCCATTATCACCAGTTTGTCCGAGGAAGCCCACAGTTTCCTTGTCTCTACTATCGGTGAAAAAAGAGTCGACCTGTCTCTCAAGTTTCTCCAGAGCGGTGTGAAGTGGCTGTCAGATGCAGTGGCATCAGCTCTAAACGTGGCCATCCGGTATATTACGGAAATCTTGGAATCGGCAGGAATTGATGCCAAGTTACCTTTCCAAAAAGTGACTCCGGAGGGGGTGATTTTTGTGACTCAGTGGGCCATCCTGGCTGTTTTGGCCTACTGGATCTTGTCCTTCATCCTGCGTTTGGTTGTGGGAGCTGTGAGGCAGGCGCTGTGGCTGCTCAAGCTCTCCTTTGCTGTTGGCACGTTTGGATTGATTCTCAGCGACTCTGGAGCCTCAGCAGAAACCACAGCACTGAGATTAGCAGGCCTGGCGTGCGTCTGTGTCCTGCTGGGAATCGGTACAGCATCTGCAAAGTCAGACGCACACCTGGAGAACAAAGTCAAGATGCTGGAGAGGAGATTGAAAGAGATGGAGAAAAGCAAAATGGAGTGAGATGATGGAAAGCAGATCTGAAATAACACCATTGCGAATGCGAGATGTTAAACTTGAAAATAGAAGCACAATTTTTTTGCCAAAACTTAAATTGTTGTTCAGTAATTGTTTGTTAAAGGATCAGTTGATTAgcaaagttgactttacttataaaATTGAGCTaatccattgtaacttggaactgttaagttgactttattttttataattatgcatacagctcatttacttaatcattttaaggaaacaggtttactcattttttcTAAGTTAAGTCAACTATTTGCGATTGACAGTATAGGGTCCCATAGCAAAGCTCTTTGTGGCATTTGAGATACTGAATTTTAAACCAAAATACTAAATCAAATGTACAAGCATTTGTCATTCGGGGAAATGTATTTAACGAGTTCATTATaataaatttgttgaaaaaa

Function

symbol description
si:dkey-9i23.15 Predicted to be involved in cellular response to gamma radiation; intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; and negative regulation of cell death. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM109 (transmembrane protein 109).

GO:

id name namespace
GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator biological_process
GO:0071480 cellular response to gamma radiation biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-361 Predicted to be involved in cellular response to gamma radiation; intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; and negative regulation of cell death. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM109 (transmembrane protein 109).

Ensembl:

ensembl_id ENSDARG00000093997

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002371 True 1429 mRNA 0.41 3 44925422 44928987

Neighbor

gene id symbol gene type direction distance location
XLOC_001447 tcirg1a coding downstream 24259 44870880 ~ 44901163 (-)
XLOC_001446 si:dkey-9i23.8 coding downstream 113408 44802794 ~ 44812014 (-)
XLOC_001445 si:dkey-9i23.6 coding downstream 128891 44784793 ~ 44796531 (-)
XLOC_001444 si:dkey-28b4.7 coding downstream 214485 44707054 ~ 44710937 (-)
XLOC_001443 si:dkey-28b4.8 coding downstream 221161 44651727 ~ 44704261 (-)
XLOC_001449 si:dkey-9i23.14 coding upstream 1470 44930457 ~ 44933094 (-)
XLOC_001450 tmem176 coding upstream 6455 44935442 ~ 44940953 (-)
XLOC_001451 smu1b coding upstream 83404 45012391 ~ 45042210 (-)
XLOC_001452 rps6 coding upstream 114780 45043767 ~ 45049603 (-)
XLOC_001453 NA coding upstream 163957 45092944 ~ 45096173 (-)
XLOC_001440 BX908740.2 non-coding downstream 389204 44534625 ~ 44536218 (-)
XLOC_001427 CR385050.3 non-coding downstream 971795 43952298 ~ 43953627 (-)
XLOC_001417 NA non-coding downstream 1308253 43518209 ~ 43617169 (-)
XLOC_001416 NA non-coding downstream 1769969 43130890 ~ 43155453 (-)
XLOC_001415 CR925858.1 non-coding downstream 1950547 42974760 ~ 42974875 (-)
XLOC_001458 LO017716.1 non-coding upstream 378174 45307161 ~ 45313876 (-)
XLOC_001464 NA non-coding upstream 710145 45639132 ~ 45647846 (-)
XLOC_001466 NA non-coding upstream 767847 45696834 ~ 45700570 (-)
XLOC_001468 NA non-coding upstream 903788 45832775 ~ 45837990 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_07707556_07709034 NA coding CI01000049 null 7707556 ~ 7709301 (+)