CI01180000_06839627_06853120


Basic Information

Item Value
gene id CI01180000_06839627_06853120
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6839001 ~ 6853707 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_06839627_06853120.mRNA
CATATAAATGCATATTTCATTTCCATAATAATAATAATAATAGGTGGTGGACTGTAACAAAGTAGTTGTAATTTTACTAAAGTAATTTTGAATTGAATCATGAAATGAATAATTTTCTGTTCATTAGTAGTTACTTCATAGTTATTTTTCTTGAACATTAATTAGTAGATAATTAATAGTAGTTCTATAGAAGGCATGACAGAATTCATTAGTTATTGATTAGCTAACTGTTACTTAACATAATCAAAATTCTATTACATACTGATTAGTTAACACATCTTCCTTAGTAGTTAACAGTAGTGACTTAAGTGTTAATGAAGAATTACCTATTAGTTCTTCAGTAATTCCTTATTAGTTATGCAGTAAGAAACAGTATTCTAAAGTGTTATCCTAAGTTTTTGCTTTTTAATATTTTAAGTTGCTCATTCAAAACATTTTCTACATTCGATCAATCAGTTTTTAAAATAGTTTAAAATAGTTTTACAGTGCAGAATGCATGTTTTGTCCTTTGAATGTGGACACTGATGCAATTCTTTTGCATGTTGTTTCACATACAGGTTTAAAATTTATGCACAGAAATTCACATGCATTTAGCAGGAGAACAGGAAAAGCACAATTGACTTAAAGATGGCAACTGCTTCAGGAGTTCAACTGAGTGGCAAGAAAGTGCTTGATATTCTCAGAAAGATTCTAAATGAACATTCAAACCCTGAGGACTTTGTCGAAGCAGCTGAGGTGTTGAAAAAGTGGAGCAAACTGAACGGTGTTACCACAGACAAGAAAGAAGGCAGCTTCCCCCAGAACTGGCTCTGTGAGTATCTTCAAGTAATAGATCAGTTTGTGGAAAACCACTTTCCCACGCTGCCAGGATCTCAGTTAAAGCAGTTACAGGACTTTCTAAAGAGCACACAGAACAAGATATGCTACGAGGTCCTTCGATTAACACCGGTACTGGAAGATGCTGGGCTGCTAGTTCATCTGATTGACAGTTACAGTCGTCACCTCTTTACCAAGTTGGACCTGCTGCTAAACAGAGATCTGTCTGTGAAGGAGACCTTCTGCCTTATACTGTGGGGAAAAGATGTTTTCTTCAGCTCAAAATTGACAGTGAACGACCCAATGTGGTTGACAGGATGGTTTGAGAAAGCAAAGCTGAAACTACTTACACAACTTCAGAAGGACATCTCTAGGACTTTAGAGAACACCCTGCACTATGATGAGCAACATGGACATGAGGACTCAATGGATGAAGAAACGTTCATAAGAGTTCACATGGATGTCACTCAGTGCCTGAATCATGCTATTTCAGATGCTAAAAAGTTTGGTCTGACCTTGATGCATGCGGTACAAACACTCTGTAGTAAAGAGCTGCATGGTTTTGCTCAGAGGTATGTGGATATTGAGAATAAACACCTAAAAACACTAAGGTTCACTGAGAAGAACTCTGTGTATCTGTTTCGGATCATCAACACTTGTATGCAACTCAGATGTTGTGCTACACAAATCAGTCCAGATAAAAACAACAGCAAAGACGTCTCAAGCACTATAAGCATGCTACAGAAACTGGAAGATAATGCTTTGTCCATTGTACAAAAGATCATGAAAAGCTTAGCACAGGACAATTTAGGAGGTTATTTCAAGAAAAAGAATGTGGATATTGATATCCTGACGAAGGCAATCCACAAGCAGTGTTCATCTCTGCCTGAGACCGCCCTAGAGATCAAAATGATGATTGTGAAAATAGCTTACGACTGTGTTTCCAAAGTGTACCTGGAATGCCTGTTGAAGACAAAGTTCAGAAATCTAGAGAGGCTTTGGGGAAATGCTGAGGAAAAGATAAACAAGGATGTTCAACGTTTTCAGAAAACATTCTCTGAACTGAATGGCAGTGTTGCCCAGCAAAACCTGCTCCTTCAGAGAATGAGTGAAGTTTTGCTTCACAGTGATGTAGATGCACTGAAGATTACCTGTGGTGTTTTGTTCAAAGATTTCCCACATGAGAGTGAGCAGTATGTACCTGGTCTGCTGCGCTGGAAGGGAGTGTTATCAGAGCGACAGCACTGTAATCTCACCATTTATTCTGGTGTATACTGTGGTACGAGTGGGCTCTTTATTTCAAGTATGGCACTGAAGCAAACAAAAATATTTTACAATAAGTTGAAAGGAAAAAAACAGCATGGAAATGAAGAGAAACCTTTAATGAAAAACATCGAGCAGACAGATGATGTTGAAGTGAGTGGCAAGAAAGTGCTCGATATTCTCAGAAAGATTCTGAGTGAACAATCAAACCCTGAGGACCTTGACAAGGCAGCTGAGGTGTTGAAAAGATGGAGCAAACTAAACGGTGTTACCATAGACCAGAAAGAAGAAAGCTTCCCTCAAAACTGGCTCTGTGAGTATCTTCAAGAAATAGATCAGTTTGTGGAAAACCACTTTCCCAAGCTGCCAGAAGAGGGAGCACAAGGATCTCAGTTAGAGCAGTTACAGGACTTTCTAAAGAGCACACAAAGCAAGATATGCTATGAAGTGATTCGATTAACACCGGTACTGGAAGATGCTGGGCTGCTAGTTCATCTGACTGACAGTTACAGTCGTCACCTCTTTACCAAGTTGGACCTGCTGCTAAACAGAGATCTGTCTGTGAAGGAGACCTTCTGCCTTTTACTGTGGGGAAAAGATATTTTCTTCAGTCCAGATTCGCAGCATGTCTTCAGAGTGTATGACCCTCTGCTGTTGACGGGATGGTTTGAGAAAGCAAAGAGGAAACTGCTGCCAAAACTAAAGAATGAAATCTCTAAGACTCTACAGAACATCCTGTGCTATGAGGAGCAACATGGACATAATGAGGACTCAATGAATGAAGAAGCTTTCATCAGATTGCACATAGATGTCATTCAGTGTCTGAATGCTGTTATTGAAAATTCTAAAGCATTTAGTAAAACCCTTATATGTAAGGTACAACCGCTCTGTCTTAAAGAGCTTCATCGTTTTGTTCAGAGGTATGTTGATGCAGAGAAAAAACGGCAACCCCTGAACACAAACTCTGTGTACCTGTTTCGGCTCATCAGCACCTGTAGGCAACTCAGATTTTATGCTCCCCAACTCAACAATCCGGATATAAACGAGAGTGACGATCTCTTAAACATCATCAACATGTTAAAGAAGATGGAAGATCATGTTTTGTCTATTGTACAAAAGATGATGAAACACTTAGCACAGGACCATTTAAGACGTTATTTCAAAAAGGGGAGTGAGCAAATTCATATCCTGACAGAGGCAATCAAAAAGCAGTGTGCATCTCTGCCTCAGAATGACATGGGAAAGGAGATTCAAGAGATCTTTGGGAATGTCGCCTTCGACTGTGTTTCACGCGTGTATCTGGATTGCTTGATGAAGAGCAGGATCAAACGGCTTGAAAAGAGATGGGAAAATGTCGGAGAAAGGATGAGAGAGGACGCTCTCAATTTTCACAACGCATTCACTGAACTGAGTGGCAGTGATGACCAGAGGAACAAGCTCCTTCTGAGAATGAGTGAAGTTTTGCTTTGCAGTGATGTAGATGCACTGAAGCTTACCTGTTGTAAGTTGTTCCAAGACCTCCCTGAGGACAGTGAGCAGTATGTACCTGGCCTGCTGCGCTGGAAGGGGGTGTTATCAGAGCGACAAATAAGGAAAGTACTGGATGTGATTCGAGAAGTTTACCCAGATCCAAATCCTAGACGTGTCACCCGTCATCCCCTGAAGGGCCTTTGCTGTTGTCTTTGATCTGAATAACACCATGAGCCAAAAAAACCTTTGTTTACAAGTGTAATTCATGGCATGACTGTTTCGTGACATTCAGTTTGACACATTTTTTTAAATACTAAATTTAAAATATACATTTTTTCAAGTGAGATTTTGTTTTTACTTGAAATAGGAAACAATGGATTTATAGACTATTTGGCAAACAGCGATGACATATTTTGTGGGCGGAGCCTAACGTTTTTCTGCCACCACCACAATGCATGCACAGCTACAAATGAAGTAACCGTGACGTCTGCTACCAACTAGCAGTCTATTGGACCGCTGGAGAAAAATTAAGTAGCTTTTTTGATACTTAATGTCTTTTCTATGACAATTTTTATTCATTTTTAAAATTTTTATTTATTGTTATTTACTAATTATATTGGTTGTATTTTTTATTGTAATAAAAAAATAATTTTCGTTTGAAAATAGGATGAAATTTTATTTATTCATTTGGGAAATGCTTTTATCCACAGTGTCTTATAAATGTGGTATGTCATAAGCAATTTATCATACAAGAGTCAGCGGTACTGTATAACAAGTGGACAAGAAGTGCCTTTGGTACCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_06839627_06853120.mRNA True 4351 mRNA 0.39 21 6839001 6853707

Neighbor

gene id symbol gene type direction distance location
CI01180000_06828109_06832096 NA coding upstream 6891 6827831 ~ 6832110 (+)
CI01180000_06813558_06824034 NA coding upstream 14479 6812662 ~ 6824522 (+)
CI01180000_06762114_06762590 NA coding upstream 76229 6762114 ~ 6762772 (+)
CI01180000_06755090_06760583 NA coding upstream 78418 6755090 ~ 6760583 (+)
CI01180000_06714748_06715005 NA coding upstream 123894 6714605 ~ 6715107 (+)
CI01180000_06911043_06921434 NA coding downstream 57289 6910996 ~ 6922648 (+)
CI01180000_06992692_07007925 NA coding downstream 138985 6992692 ~ 7008521 (+)
CI01180000_07023336_07025503 NINL coding downstream 169629 7023336 ~ 7025607 (+)
CI01180000_07064360_07069339 NA coding downstream 210550 7064257 ~ 7070578 (+)
CI01180000_07100974_07142837 GBF1 coding downstream 247267 7100974 ~ 7142960 (+)
G681739 NA non-coding upstream 1303 6837319 ~ 6837698 (+)
G681708 NA non-coding upstream 101100 6737599 ~ 6737901 (+)
G681706 NA non-coding upstream 102908 6735853 ~ 6736093 (+)
G681652 NA non-coding upstream 192163 6645442 ~ 6646838 (+)
G681674 NA non-coding upstream 193678 6645108 ~ 6645323 (+)
G681749 NA non-coding downstream 24854 6878561 ~ 6878839 (+)
G681755 NA non-coding downstream 37177 6890884 ~ 6891084 (+)
G681791 NA non-coding downstream 130763 6984470 ~ 6984674 (+)
G681758 NA non-coding downstream 131318 6985025 ~ 6990500 (+)
G681813 NA non-coding downstream 307035 7160742 ~ 7161014 (+)
G681667 NA other upstream 179455 6655846 ~ 6659546 (+)
G681686 NA other upstream 204012 6632908 ~ 6634989 (+)
G681592 NA other upstream 360002 6471995 ~ 6478999 (+)
G681268 NA other upstream 1465239 5370410 ~ 5373762 (+)
G681137 NA other upstream 2053370 4783305 ~ 4785631 (+)
CI01180000_07403482_07412752 HELLS other downstream 549440 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 809716 7694529 ~ 7695667 (+)
G682232 NA other downstream 1514478 8368185 ~ 8368935 (+)
CI01180000_09036547_09038313 MGST3B other downstream 2182710 9035736 ~ 9038892 (+)
G685188 NA other downstream 3966279 10819986 ~ 10866176 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006424 si:dkey-196h17.9 coding NC_007124.7 CM002897.2 7462715 ~ 7474324 (-)