XLOC_006424 (si:dkey-196h17.9)


Basic Information

Item Value
gene id XLOC_006424
gene name si:dkey-196h17.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 7462715 ~ 7474324 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012442
GCTGAACAGCAAGCTCAGTTTTTCAGTCAAGCATGGGCTTTGAACAAAGAAATATGTTCTGGAGgtttggaaaaaagaaaaagaatgggAATGAGAAGAAGTCTTTATTGAAAAGCATAGAGCAGACTGAAGGAGGACAGGCGTTCGAAAACATGTCTGGTGGGTTTCCTGATTTAATTACAGCTAATTCTGAAGTGAGTAACAAGAAATCGCTCAATTTTCTCAAAAAGATCCTGAGTGAGACATCATACCCTGAGGACATTGACAGTGAGGTGGTGGACGGCTTCCCTCAAAAAAGCAACTTTGAGGTAATCGATGAGTTTGTGGAAAGGAATTTTCCAAAGCTGCCAGAAGAGGGAACCAAAGGATCTCAATTAAAGCAGTTACGAGAATTTCTAAAGAGCGCAGAGAGCCAGATTTACAATGATGTACTTCGCTTAACACCTGCACTGAAGGACACTGGACTGCTGGATCATCTGATAAACAATTACTTCCGTCTACTGTTTACCAAGTTAGACCTCCTCTTAAACCGAAATCTTTCAGGGGAAGAGACTTTCTGCCTTCTTCGGTGGGGAAACGATGTTTTCTTCAGTTCAGACTCTAAGGTTGTCTTCAGAGTTTGTGACCCTCTGCTGTTGACAGGATGGTTTGAGAGAGCAAAAGTGAAACTCCTGCCAGAACTACAGGATGAAATCTCTAGGCGTCTGCAGAATATCCTGGATTATGATCAGCATCATAGGAATCAAGTGGACGAAGAGACTTTCATCAGGGTGCATTTAGATGTCAGTCAGTGTCTCAATGCTGTTATTACAAATTCTAAAGACTTTAGTGATACACTGATGTGTTTGGCCCAAAACATCTGTCTTCAAGAGCTTCATCATTTTGTTGAGATGTATGTGCATTCAGAGAAAAAACACATTGAAAAGCTGCAACCCCTCAGCACAAAGCACTCTGTATATCTGCTTCGGGTCATCAGCACCTGTAGGCAACTCAGATTTTTGGCTCCCCAGTTCTATAATCAGGATACAAATAAGACAGACGACCTCTTAAACATCATCTGCATGCTACAGAAGATGGAGGATCAGGTGTTGTCTTTAGTACAAAAGATGATGAAAGAGTTCGCACAGGCCACTTTAAGACGGTATTTCAAACATGGGGATTTGCCCATTCATATCTTGACCGAAGAAATCAGAAATCATTGTGCGTCTCTGCCTCAGACTGATGTGGGAAAGGAGATTCGGGAGATCTTCGTGAATGTTGTCTATGACTGTGTGTCACGTGTGTATCTTGATTGCCTGATGAAGAGCAAGAGGAAACGTCTAGAGAAGACATGGGGAGATGTTGGAGAAAGGATAAAAGAAGACGCTGCCCATTTTCACATAACATTCACTCAACTgCAGAATGGCAGTGATGACCAGAACAACCAGCTCCTTAAGAGAATGAGTGAAGTTTTGTGTTGTGATGATATAGAAGCACTGAAGCTCGACTGTGGAAGTTTGTTCAAAGACTTCCCTGATGACAGTCAGCAGTATGTTCCTGGTCTGCTGCGCTGGAAGGGGACTTTATCAAAGCGGCAGGTGAGGAAAGTACTGAAAGTTCGGGATCTCGACCTGGATGCAAATTCCAGGGATGTCGCCTGTCATCCTTTGAAGGCCCTATGCTGTtgtatttaattgaaaaaaacatCATCAACCAGAATGATAAAACTGTTCACAAGTGT

Function

symbol description
si:dkey-196h17.9 Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to be part of exocyst.

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0051601 exocyst localization biological_process
GO:0000145 exocyst cellular_component
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-317 Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to be part of exocyst.

Ensembl:

ensembl_id ENSDARG00000102319

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012442 True 1720 mRNA 0.43 11 7462715 7474324

Neighbor

gene id symbol gene type direction distance location
XLOC_006423 si:dkey-45k15.1 coding downstream 30000 7368994 ~ 7432715 (-)
XLOC_006421 NA coding downstream 140039 7269212 ~ 7322676 (-)
XLOC_006422 NA coding downstream 145776 7305415 ~ 7316939 (-)
XLOC_006420 ninl coding downstream 228904 7171066 ~ 7233811 (-)
XLOC_006419 NA coding downstream 307878 7154322 ~ 7154837 (-)
XLOC_006425 pitx3 coding upstream 81396 7555720 ~ 7575216 (-)
XLOC_006426 NA coding upstream 272787 7747111 ~ 7749201 (-)
XLOC_006427 macroh2a2 coding upstream 278725 7753049 ~ 7767600 (-)
XLOC_006428 NA coding upstream 694389 8168713 ~ 8230165 (-)
XLOC_006429 si:ch211-250c4.5 coding upstream 797719 8272043 ~ 8279533 (-)
XLOC_006338 rn7sk misc downstream 6636490 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 2790417 10264741 ~ 10264905 (-)
XLOC_006417 NA non-coding downstream 1124057 6335364 ~ 6338658 (-)
XLOC_006411 NA non-coding downstream 1274971 6150221 ~ 6187744 (-)
XLOC_006434 BX004962.1 non-coding upstream 1175387 8649711 ~ 8650051 (-)
XLOC_006435 BX004962.2 non-coding upstream 1180795 8655119 ~ 8655447 (-)
XLOC_006437 NA non-coding upstream 1286370 8760694 ~ 8776477 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_06839627_06853120 NA coding CI01180000 null 6839001 ~ 6853707 (+)