XLOC_006428


Basic Information

Item Value
gene id XLOC_006428
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8168713 ~ 8230165 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012450
GGCTTCAAAGAGGTGCAAGAAACACTTTGGTATATGATTGCAAAATCCAGTTTCTTGCTTCTCCCActatctctccctctctctacACACATACAATGCTTTCTCAGGAGTGTTTCCCCTCCCTCCATCTGGCGATCCGTCACCCCTCCTCCAGCTGCTGATGGTCCTGCTGTAGGCATATTCTCCTCAGCTCACTCACTCCTTCACAACCAGCCACTCGTGTGTGAAACTGTCCTGACAATATGCTTAAACCTGGATATATCGCAAACAGCGCACCTTTCTGGAGCACTTCCACAATTTGAGCTCTCAGTTCAGGAGAAGGACAGTCAATCAACACTACAGCTATGAGCTGTGCTTGAATGACCCATTGAGGAGCATTTTTCCTTTTTGACACTGAACGCTGCTCAAGATTTAGACATCCATAATGAGTCTtaagaagaggaagccaagcatgGTGTTTAGCTGGCACAAGTCTTTCTCCATCCTTGCCCCGTGGAGAAAAGGCAAAGGGGATATTGTTTTAGAGAATGAAGTTGTCCTGACGAAAATGAAACTCCTCAACAACTTTCCTGAGAAACTCCTAAATGGTGAAGATTCCATTTCATCCATCTCCATTTCAATGTCTGAGCAGGAAAACACAGAGCCTCTCCAGGCTGACGACGTTATGTCCGTCCACAGTGTTGCTCCTGAAACAACAGTGCCTGAAACCAAAACAGACTATCTATGTTCGATATTTGCTGATTCTGGGCTTCCGAGATTGTACAAATTTGAATCTGAGGACTCTGGGGTAGAGATGACTAGTGGAGCAACTTCCCCATCCACCCCAACTGGTTCAGAGCAAAGCTTTGTGGTCCACAGCAGAGAGTCTTCATGCGACTCTGGCAACCTGAACTCTCCGTTATCTGCTGACAATCATCTCGAAGATAGTTCGGTCTTTTTGGAAACTGAACAAACGTCTTGTAAGTGCACTAAACAAGATTCTAATACCATTTTGGGAGATAGAACAGAGGATGAGAAAGCTGAGGACAACTTAATGGACATCATTACAGATTCAGAAAGGTCTGAGGATAGAGCCCTGAGGAATACCACAGAGAACTGTAAAACTACCACTGAAATCGCAACAGTACGAGAGGAAATAAACACTGCATTGGCTGATGACACCATGTCAAGGAGTTCTGCCGATCATTATGATGGCACGACAGGACCTGAATTTCAGCAATCGCCTTTGAGGAAAAGTACAACCAGCGACAGTCTGGATGAATATATGGAGGAGTGCTGCAGGTTAAGTGAGGTGAACCAGGCCTGTCAATCCAACCCACTGGGCTCTGGACTGGGATATCTAGAGCACATCTGCCAACTCATAGAGAAGATTGGACAGCTACAAGAACATAACCTCCGACTACAGAAACAGATCTGTGGCCTGCAGAAGGAAGGAAGGGTGATCAAGACTAAAGAGGACTTTTTCATGCAGCACTGTAGCTGTGGAGCAGCTGGTTTGGCCTTTCAAGAGCTGAAAAGACACTTTCGCAGTGACCACTACAGCCCAACGGCATCGAACGGCACGCTGTCTGACCTCACCACAATCCCGGAGGTCACGCGCATCCCCCTCAGGGCAGCCATGAGAGATGGGGAGATGGGCTGCCAACCTCTGCCCATTTGGAGGAGGGGCTTGAATCGCAGGAGTTACACAGAGGGAGAGGCCAAATACCTGAGCGACAGCGCTGAGGTGCTCTCTGCTCCTCACAGACGGCTGAGTGAGAACTATACTTGGGGAAGAGTAAAGGATCTGGTAAAGAAGACCAAACTGAGGAACCAAAGCCGACTGGGACTGTCTTCAGGCTCCTTGAAAAGATCATGTCCTCAACTTTACCGCCCAGAAGTGATGTCAGCAGAGCGACCCAGGACAAACAGAAACTCCATGATCACTCTGGGCCATCAGAAATTGGACTATCTGTGGACACCGTAGTATTAATCAGACATTGAGCAGATGGCCTGCGATGGAGCAGCTTTTCCACGAAAGcaatggaagttttttttttgcagctagCAGATGGTTTTTCCAGACTGAAGAACGAAATGGGAGAGAAATGTACAAGGATGTGATGAACAGGATTTAAGTAATGATGGAAATAATGTTGGCATTGTGTATACGTTGATAAAAGTGATAAGTTGATGGAGATTAACAACTCATTAGATTTGTCAGCTAACGACGTACTATGTAAACAAAGATTACAATTTGTGATTTCAGACAAAATGAATTCTTATGTCATGTAAATATGTTCCTGGGACAATTTTCCAGATGTTTCAGAATTGTAAAATACTTGAATTACAgacaaataataacaaatgttgAAGATGCATGCTCTAACTTTATATAGATCATTTTGTACCACTATTATAAGAATTCCATGTGTAAGTGTGTAAATACAGACTGtaacaaatgtgtatatatatttccaTGAAGCATGGATCATGTGCAGATGAGAGTGGAAGAAGGGCGCTCCCACGCCTGAATTCCTGCAAACGTATATTGCTGTTATGGCGGGGCTTATGATAACACGTAAATTATAGCATGTACAGCAGTTCTGTATGCTGCTTGCCTGTCTGATGTTATATAACATGTGTGACCTTTCGCCTCCTAAAAAGTTAAGCAATGGCCGGAGTATGAACctgaaacatttttattcatttaaatgtattataaactGTGTATTATCAAGTGCTTCCTATCCTGTGTGTCTGCCAAAACAAAAATCAGTTGAAAACAAAAAGGATTTCAATTGACCTTTCGCTAAGCCCCACCCTTCTTAGCTGCTGTTGTtatgcctgtcaagctttcgtgcctcgCACGTCTATTACATTATGtatgcgccggtgtcagacattcccaggaatataattagtcatttttcaCAAACAGGTGAATTATccaagaaagccagacaaaaaaggactggaGTGTGTATTACAGCGGTATATTCATGACATAATAAGCAACCTATTAGAaaattaggtcccactttatattaagtgtccttaactactatgtacttacatcaaaaataattacaatgtacttactgtgttcataaagtattTGAGAGCACTtttggtgctcttgagttgggataggggttgggttagggacaggtttggtggtgtgggtaggtttaagggtgggttaaggtgtagggaatggtcagcagtgtatttacaaatgtaattatagaagttaattacagatgtaattacatacagatatttaatcaagcataagtacacaataaatacatgtatttacacaataagtacattgtaacaaactaattattcctgtgtaagtacatattagttaaggccacttaatataaagtgggaccgaaaattATTTCATCAGAATTGaagcctagccacctcatacgctgaccattcaacagcttagttcccGCACAGCAGGATAggtgaattttaaaaaataatctaacatCAAATTAAACcctgatttctctctctctttttttttttagccaaaaagcctgatagattaattgttttGCAATGAAATATAGTTACTAACCGAcaaggaaacacgcatggacagtgcttctacataattaGTTCATAGAAAGAACTGCCAGAAAGGGGTAATCGATGGATTtgtgctgaatattagcatcattgacccataacaatgtacattGTACAATATCTATTACTGTCAGTATTTGGTGtgctttttatacagtttctattctaatttgcagttaagtgtaaaaaaataaataaattgaaaagcaaatcaaagtataaatagcagaagtgaacaaatagattttccctaccagcaaatattaatccgcCACCAagtataaaagcagacactaacccgcTATAACGTCttcaccaatgactaaatctcaaAAAAATCTCTGTAAACATCAGTaaattgtagctctgacatggacatgagggttataaatgactgaaaaacagctgtggGTGAAGTATGTTGATTGCAAGTGCTCAATTTGTGATcacatctcggttttgttctgttgtaatttcaaatattcgtagcttgaaacagatggaaacatgactgctattagtatgaccactattgcgagggcttaaacggagcagtgctcataatatcgagcgaaaaaagaaaaagacagctgggaaacataacctgctttgtatttatgtagaaaacaatttagatctttttagggtacgaggattttgagttattgttgtctatcactaaatgtgtcaggaatatcgaaaacaaaacatACGCAATGTAACCCCGCTCTTCACACAGCTTggtccacgctggcatttctccccttgggttttaggttttggaaaGGGAAAAAAATTCCACGACCCCGTCCAAACTTTAGGGATAcggggtgtcagatttgcacaatccatatgcacaatgcTTTatcttgtttccctcgctcgaaagcttgacagaccttCTGTGTGTAGCTACGGCTGCAAAGCCATGATTAATCTGTGgcagtttttgggtgtggcttagcgaaaggtcaattaaaattaaatgcattataCAGTAATCTATCTCATCTGAGCTTGATTATTTATTTCAACAATGCCCAGGTTTAAATATCCGCTGCAAATCCAACATACTAGAAGAACtcatatagtaaaataaaatacataaaggtttaaaaatgatcaacaaatgaaaaaaaaaatttaaatggttCGAAATGTATAAAACTTTACTAAGTATAATGTGGACCTCAgggataaaataaaatgaataaataaaagttacaaaattaaccctttaaatcaGTGGCCTTTAACCTTTTTATCACTGTGGAACGGTCAGCACTTGACTGAAGGAGTGTGGgggtttgtatgttttttttttctcattgctgcagctctgatacaagttttattaatggaaaaaattacaaagcactgcagtgtttgggtgttctgtgtttgtctaagaTAATTAGTCTATCAAAATGTGTaaattccatacaagctgaagctgatcactcaattcttgtcatgtgactcgcggTGCGCTCATGGGATTCGTTCACTTGGAGCGTCTGGAAAGTGCGAGCGCGTCCCATCACTTGTGcgtgcacctccattggaaaaaacaaacttgcgcaaactctagaaaagacgcgatatgtgaacagcccctaaAAAGGTCACTGTTATTTGCAATCTCCAttagttgatcttcttgcacagccatggtggattcacctgatttgttgacaaatgtgttgcggatccattccttggcagttcgtgggtccttcactgggccttttccccttagcaaagaaacttttcaaagaAGTCTGTCTCTTACTCATTTtactgcttgtgggttaaatttgagTGAGCAAGATGTAATCacagacatttttcaaaataaaacacttttcaaaataaaaatcgtTCAGAGccagataaaaaataaaactgaaaaaatgtatgatttcttgtgtggcccagtgccaattgatccatggaccggcctggtggttgaggaccactgctttaAATCGATACAGTATTTAAATGCAGGAGATTTATCATACTTGGTGTTGTTACTGATtcacagtaaaaacagtatacaTGACAACATTAAGTTAAGCTCAGAAATGACCACTGGCATGTAACTGTCTTTGTTGACAGCTGACTGAGTGAGGTACTAAAATACTGCTGTCTTTAAGGACTTTTCTCAAACCTCTTCCGGTCTTCTTTGTAAAAGATAAAACATCAATTTTGAAatatcaattttttaaataaactttgtaACACAGTATTGTACTATCCaggaaagtgttttaaaacacaaacaatctCCAGCATGGTCATTTGATGTTTGCCTGACCTATCGTTTCATAGCCGCTCTTTCGAGTATTGATGTTGCTCAGTGTCAAGACAAAAGATTTGTACTTATCTTGTGTATTGTCGTGTATCAAAATTGATGGAATAATTCATTATGCATATTGCATtgttattcaaatgtattttagttaataaaatatgatatttctACATC

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0007276 gamete generation biological_process
GO:0061028 establishment of endothelial barrier biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012450 True 6079 lncRNA 0.40 8 8168713 8230165

Neighbor

gene id symbol gene type direction distance location
XLOC_006427 macroh2a2 coding downstream 401113 7753049 ~ 7767600 (-)
XLOC_006426 NA coding downstream 419512 7747111 ~ 7749201 (-)
XLOC_006425 pitx3 coding downstream 593497 7555720 ~ 7575216 (-)
XLOC_006424 si:dkey-196h17.9 coding downstream 694389 7462715 ~ 7474324 (-)
XLOC_006423 si:dkey-45k15.1 coding downstream 735998 7368994 ~ 7432715 (-)
XLOC_006429 si:ch211-250c4.5 coding upstream 41878 8272043 ~ 8279533 (-)
XLOC_006430 atl2 coding upstream 51058 8281223 ~ 8304605 (-)
XLOC_006431 dhx57 coding upstream 90290 8320455 ~ 8353560 (-)
XLOC_006432 epas1b coding upstream 145447 8375612 ~ 8446341 (-)
XLOC_006433 prkceb coding upstream 222189 8452354 ~ 8601184 (-)
XLOC_006338 rn7sk misc downstream 7342488 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 2034576 10264741 ~ 10264905 (-)
XLOC_006421 NA non-coding downstream 846037 7269212 ~ 7322676 (-)
XLOC_006422 NA non-coding downstream 851774 7305415 ~ 7316939 (-)
XLOC_006419 NA non-coding downstream 1013876 7154322 ~ 7154837 (-)
XLOC_006417 NA non-coding downstream 1830055 6335364 ~ 6338658 (-)
XLOC_006434 BX004962.1 non-coding upstream 419546 8649711 ~ 8650051 (-)
XLOC_006435 BX004962.2 non-coding upstream 424954 8655119 ~ 8655447 (-)
XLOC_006437 NA non-coding upstream 530529 8760694 ~ 8776477 (-)
XLOC_006458 NA non-coding upstream 1271602 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 1847050 10077215 ~ 10118935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_07379273_07380075 NA coding CI01180000 null 7379203 ~ 7380075 (-)
bowfin (Amia calva) AMCG00003107 NA coding CM030139.1 CM030139.1 11571865 ~ 11600042 (+)