XLOC_006433 (prkceb)


Basic Information

Item Value
gene id XLOC_006433
gene name prkceb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8452354 ~ 8601184 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012457
TTCTAGAATAAAATTAGTGGAGCATTTGTAGATCATTTACAGTGCAGCTGGAGTCATAGTACAGCACTGAAACATCTGAGGATCACACCCTAACGAATTCCAATGTGTTTACAAACCAGCCTTTCCGAATATTCACAAATTATAGGCTTTTAGGCTAAAATTGTATTAAGATATAGTGATTAAGAAACAAACGGCGTTCACGCGGTCTGTAGTCGTCTTATCTGCGTTTTATGCCTTTGGGCAAGGTGCATTATTCACATATGGTCTCCATGTTCCTTCTTCATCTTTAAGCCTGTGTATGATGCTTGACCAGAGAGTAGCAGCAGCGTCGGGTCCAACAGGGCCGCTCCAGTACCGCACTTACTCAGCCCTCTCCGCGCACTAACTGACGTGTTTTGCGCATTTCCTGGACCAGCCTTCAGACACATACAGTCGGGAGAAAAAGAGGCAGGTCTGCAGGAAACTGAGTACCGACGGACAAACAAGGATCCTGGGAGAAGCAAGTGAGAACGGAACCCTTGAAAACACTCTTTCTCCTGTCAGGAGCGCATCGAAAGACGCTTTTGCGGAGATAACTTTCCTCCCAATGCGCGGAGGAGACACGTCCAGCGTTCCAGCCAGTCGATGGAACGGGCAGCTCACCCAGAGGAGATCCAGCATATATTTCTGGCATGTTTTGAGGTGTGGAATGCTGGTCAAGTCGCTGCTGATACGCTGTAGCTCTGTCTTTTCGCTCCAACTTGGATTGCTGACTGCATGCAGGGTGTTTGGACAGCTTCAAGATCACATGCAGGTTGTCCGTAGGTCATAGCAACAGATCCCCTCTACCTTCTACACACTGCATGAAGATCCACGCGGACGAGGAAGGGCATTTCCCGCTAtctcataaataaaaacaatcttgAAAACACACCGGTGGACCGTGACATACACTGGTTAAATAATTAACCAGGCGCTGAAGTGGAATATTGTTACTAAAGCTCTCGAAAGTGGCCATGGTGGTTTTTAACGGTCTgctgaaaataaaaatctgcGAGGCTTTGGACCTAAAGCCCACAGCTTGGTCTTTGAGACACGCCGTCGGACCTAAGACTCAAACCTTTCTGCTAGACACGTACATCGCCCTCAACGTAGACGACTTTCGCGTGGGTCAGACTTCGACCAAGCAGAAGACCAACAGTCCCGCCTGGCACGATGAGTTAGTGACGGAGGTGCACGATGGACGGAAGATTGAGCTGTCGGTGTTTCATGATGCACCGATTGGCTACGACGACTTTGTGGCCAACTGCACCATTCAGTTCGAGGAACTGCTGCATAACGGCAGCAAACACTTCGAGGACTGGATAGACTTGGAGCCAGAGGGAAAGGTCTTTGTCATTATCGACTTGTCTGGATCATCCAGTGAAGCTGGTGGCTGTGAGAATGAGGAGCGCGTGTTCCGAGAACGCATGCGTCCCAGGAAGAGGCAGGGAGCTGTCCGGAGAAGAGTACATCAAGTCAACGGACACAAGTTCATGGCCACCTACCTGAGACAGCCCACCTACTGCTCACACTGCCGCGACTTCATCTGGGGTGTATTAGGAAAGCAAGGTTATCAGTGTCAAGTGTGCACCTGTGTAGTTCATAAACGCTGCCATGAACTGATCATCACTAAATGTGCAGGTTTGAAGAAACAGGAGGACACCGCAGAGGAGGTAGGATCCCAGCGTTTCAGCGTCAATATGCCTCATAAATTCCGTATTCATAACTACAAAGTCCTCACATTCTGTGACCACTGCGGTTCATTACTGTGGGGCCTGCTGCGGCAAGGGCTTCAGTGTAAAGTTTGTAAGATGAATGTGCACAAGCGTTGTGAAATTAATGTAGCTCCCAACTGTGGAGTGGACGCCAGGGGCATCGCTAAGGTGCTGTCTGACCTTGGAGTCACTCCAGATAAACTCTCCGGCAGCGTCCAGAGAAGAAAAAAGATCTCTCAGGGTCCAGATCCACATCCCTTACCCATATCTCCACTGTTAGAAGAGGACCGATGCAAATCTGCACCCACATCACCATGTGACCAAGATATAAAGGATCTGGAGAACATCAGGAAAGCACTTTCGTTTGATCACCGCAGTGAAGAGATGAAGCAGGCCTCAGAGGGGGTCTCAGAGGAGACGGGGGAGGCCAGGGAGAACGGAGAGGTGAAGACGGTTCAAGCCAAAAGGATGATGCTGGAAGACTTCTCCTTTATCAAAGTGCTCGGAAAAGGCAGCTTTGGCAAGGTGATGCTGGCTGAGTTAAGAGGCACTGATGAGGTTTTTGCTGTGAAAGTGTTGAAGAAAGACGTTATCCTGCAGGACGATGATGTAGACTGCACAATGACTGAAAAACGCATTCTAGCCCTGGCCAGGAAACATCCCTATCTTACACAACTCTACTGCTGCTTTCAGACTAAGGACCGTTTGTTCTTTGTTATGGAATATGTGAACGGTGGAGACCTGATGTTCCAGATACAACGATCCCGCAAATTTGATGAAGCTCGTTCCCGGTTTTACGCTGCTGAAGTGACCTCAGCCCTCATGTTCTTGCACCACAACGGGGTCATTTACAGGGATTTGAAACTAGACAACATTCTGTTGGATGCAGAAGGTCACTGTAAGCTGGCAGACTTTGGCATGTGTAAGGAGGGAATCCTGGATGGCATCACAACCACAACATTCTGTGGCACACCAGATTATATTGCCCCAGAGATCCTTCAGGAGCTTGAGTATGGTCCATCAGTGGACTGGTGGGCTCTAGGTGTGCTGATGTATGAGATGATGGCCGGACAGCCTCCTTTTGAAGCAGATAATGAGGACGACCTTTTTGAGTCCATTCTCCATGATGACGTCCTGTATCCTGTTTGGCTCAGCAAAGAGGCAGTCAGTATTCTTAAAGCGTTCATGACGAAGAGCCCCAGTAAGCGGTTGGGTTGTGTAGTTTCCCAAGGACTGGAAGACGCTATTAAAGTGCATCCATTCTTCAAAGACATCGACTGGGTACTTCTAGAACAGAGGAAGGTCAAGCCGCCATTCAAGCCACGTATTAAAACTAAAAGGGACGTCAACAACTTTGACCAGGACTTCACCCGTGAGGAGCCGGTGCTCACCCCAGTGGAAGACGCCATCATCAAGCAAATCAACCAAGAAGAGTTCAAGGGTTTCTCTTATTTCGGGGAAGAGACCCTGTCTTAATGCTGAAACCTCCATCTCCTGCGCTGTACTTTGCGCACATCTGCGCTGTGAACGCTGTGAAAGCCTATGAGCTCACCGTAGATCATCATTTACCAAGAATTTGATGCTTTAAACGAAAAGTAGCGAGTTAGGCTTTACGATCTTTCCTGCTGACGACACACAACAGAATCCCACACGTTCACCAAATGAAACTGAAACGAGTTGACCTGGTTTAATGTATGTAAAATAGTGAGCTATACCTAAGGGAGCTCATGTGATATAAGTAAAGCAGCTAGTTAGATCTCAGAATTTTGTAGACGGTCATTTTAGGTTCATTTCTTCTCCCATAATGCAGTGTAGCAGGGTTTTGGTACCTCTGGAGTCAACACATCTACACTAGAACTGctttgaaatgcaaaaaaaaaaacaacaatagtaAAGAACCAGTGATTGTATTGCAGGTGTGATACTAATAAAGGTAAGAATCGGGAGTTTTAAAGCACTCAGCATTGGGATTGTCCCATAATGGACTGATAGCCGGAGACTTAATATTGAAAATGCACAGACTCAGAACTGCCTTTCTTGAGACCATTGCGCCATTTCCATTTGAAACAGCAGTGTTGATATATCCTCGTGTtaaaaacatgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcatatATAATGGAGGGTAGGGTTACAAAAGGTCCCTCTTTAATgtttctttgtgtatgtgtgagtgtgtgtatgtttgattTTTTATGATATTAATGGGTTATTGTTCTGTTGCTGATTTCTTTAGTGCAACAAAACCTATTATTGTAAACGGGTCAGGATAGTAGCCAACCATGTCTCTACAGTCCTACTTACAGTACATGTCCTGATTACCCTGATTGTTAGCCTGTGAACTTTGGAAATAGACTGATCATCTAATGCATGGTTATGCCTATGATATTCTTCTGTATTGTTAGACAATGAGAAACTGTTATGTGCAATattctgcgtgtgtgtgtgtgtgtgtgtgtgagtgttggtCTAGCGTTACAATTTTTTCCCGTCTCCATTTCAACTTCAGATTCAATGTCTCTGATTTTTACTGTTTCTCACAGTCTTCTACATCTTTGGTCTTTTATGCACTCTAGTCAGACAAGACAAAAAGTTAAGGTCTTACGTTAAATGCAGATAAATAATCTTCCATTCTAAATATAGCACAACTCCAGTACTCCAGAATTGCTCCCAATCTGATACCTGTCACATATTGATGACATATAAAGTTAGAATTTGATTAATAACAATATGATAAATATATTGTGCAATTGTATTACATAATCTTAAacataatctttattttatttatttatttattatttttacttgccaACGTCAAGCTTTAAAATCTACATAAAAccaaatgcatttatattttctttatgCATGTTCCTGGTTTTATTGTGCAtgatttgtctgtttattttattatttttc

Function

symbol description
prkceb Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within glomerular filtration and glomerular visceral epithelial cell development. Predicted to be located in cytoplasm. Orthologous to human PRKCE (protein kinase C epsilon).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0003094 glomerular filtration biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function
GO:0004698 calcium-dependent protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081028-47 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within glomerular filtration and glomerular visceral epithelial cell development. Predicted to be located in cytoplasm. Orthologous to human PRKCE (protein kinase C epsilon).

Ensembl:

ensembl_id ENSDARG00000069928

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012457 True 4757 mRNA 0.45 15 8452354 8601184

Neighbor

gene id symbol gene type direction distance location
XLOC_006432 epas1b coding downstream 6013 8375612 ~ 8446341 (-)
XLOC_006431 dhx57 coding downstream 98794 8320455 ~ 8353560 (-)
XLOC_006430 atl2 coding downstream 147749 8281223 ~ 8304605 (-)
XLOC_006429 si:ch211-250c4.5 coding downstream 172821 8272043 ~ 8279533 (-)
XLOC_006428 NA coding downstream 222189 8168713 ~ 8230165 (-)
XLOC_006434 BX004962.1 coding upstream 48527 8649711 ~ 8650051 (-)
XLOC_006435 BX004962.2 coding upstream 53935 8655119 ~ 8655447 (-)
XLOC_006436 mcfd2 coding upstream 80992 8682176 ~ 8692860 (-)
XLOC_006437 NA coding upstream 159510 8760694 ~ 8776477 (-)
XLOC_006438 calm2a coding upstream 176449 8777633 ~ 8785610 (-)
XLOC_006338 rn7sk misc downstream 7626129 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 1663557 10264741 ~ 10264905 (-)
XLOC_006426 NA non-coding downstream 703153 7747111 ~ 7749201 (-)
XLOC_006421 NA non-coding downstream 1129678 7269212 ~ 7322676 (-)
XLOC_006422 NA non-coding downstream 1135415 7305415 ~ 7316939 (-)
XLOC_006419 NA non-coding downstream 1297517 7154322 ~ 7154837 (-)
XLOC_006458 NA non-coding upstream 900583 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 1476031 10077215 ~ 10118935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_01322824_01387494 PRKCE, PRKCEB coding CI01000012 null 1322824 ~ 1388941 (+)