XLOC_006438 (calm2a)


Basic Information

Item Value
gene id XLOC_006438
gene name calm2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8777633 ~ 8785610 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012464
ACGTACAGTTCTGCGTTTGACGCATCACATTTTAGCAGAATGTATGTCTCCGCTGGTTTGATAGTTCCAATATAACAGGTTCCTCTTTCCTGCATATACCATATCTTAGCAATATGAATGGATCGCTATTTTAAAACGTCTACGGTACTTTGTATCGCACGTTCATTTATCACAACTAAGTCATATTTGACGATCGTTTATGATAGGGAAGGAAGTGTGGTGGCGGATGGAGAAATGCAGGGGGAGGAGTTTATAAGCGACCATTAAAGGCGCGTCAAGCCCTATGTGATTGCATCCTGTTTGTTTGCCAGCTGTGGACTGTTGTTCTGTGTGGAAATACATCTGCTAAAACAGCGCGATGGCTGACCAGTTGACAGAAGAGCAGATCGCCGAATTCAAAGAGGCTTTCTCACTCTTTGATAAAGACGGTGATGGTACAATTACTACCAAAGAGTTAGGTACTGTCATGCGCTCACTTGGGCAGAATCCCACAGAGGCTGAGCTGCAAGACATGATAAATGAAGTTGATGCTGATGGAAACGGCACGATAGACTTCCCAGAGTTCCTGACCATGATGGCAAGGAAGATGAAAGACACGGACAGTGAGGAAGAGATCAGAGAAGCATTCCGTGTCTTTGATAAGGATGGGAATGGATACATCAGCGCAGCGGAATTGCGCCACGTCATGACAAACCTTGGAGAGAAGTTGACTGATGAAGAAGTTGATGAGATGATTCGAGAAGCAGACATTGATGGAGACGGACAGGTTAACTACGAAGAATTTGTACAGATGATGACTGCGAAATGAAGGCCTTGTACAGATCCTCTCTCTTTTATAAATAATTTgccttttttctgtttaatttatCTGTAAACCGTCAAATCCCCTCCCCGTACTTCCTACCGGCTGTCCAAAGGAACTGCATGTAAACTGCATAGGATCTTCAGTCCTCAtgtccctctttttttttttttgctgtcatcGTGTTTTTGGAGTGGTGGTGCGGTTACACGATCAGGTGCTTGTTGCCGCGAAGAGGGGGTGGTGATGTGCCAAACCTTGCACGTCACGTCTGTCTGCCCCCCTTATGCGTAGCAAGAGTGGAGACCTGCCTGCTGGTTGTCTTTGAACAGCGACGTTGGCATGGCAACAATGTAGAGATGTAACTCTGCATGGACTATGGACAAAGTATATAATATATGAAGTTTCTCAGCATTGCACtactgcaaaaaaaagaaaaagacacggGTGTATCTACAAGATACTCGTACATAAACTCTTTTTGTATCTGCTGTTCTATACCAAGAACTTGTTTGAACCtaacaatgctttttaatgttttactCACTTCATtagttctttctttttcttccttttttttttttttttttttttttttgaagccgCTTAATGGCATTGTCAATGCCTCGGATAGTGCATTCCAAGTTGTATATTTGTTTTCCAATAAAATTTACAATTTACCCATACTGATAAGTTTCTTTGCTTGCAAAGCAATCTCtgattaaaaataatgttaattatgCATCCCAGAGCTGAGAAGTGTTTTTTAATATCTTGATTTCAAACATGTTTACAATATTCATTGTAATGGTGGAAACTATACATTTTTAAGTCACAAAATGAGTCTTAAATTGCCTGAAAGCTATGTGTATTCATAGGATAGCACTGGGATGAGACCTCTgtcaataaaactaaacaaaagttaAAGTTCTCTTGAATGAC
>TCONS_00012465
GAGATCAGAGAAGCATTCCGTGTCTTTGATAAGGATGGGAATGGATACATCAGCGCAGCGGAATTGCGCCACGTCATGACAAACCTTGGAGAGAAGTTGACTGATGAAGAAGTTGATGAGATGATTCGAGAAGCAGACATTGATGGAGACGGACAGGTTAACTACGAAGGTGAGTTTgtgttaaagtttatttaaaacacaCTGTTATACAGTGTCTTAAATACTATTTAAGATGCGCAATCTCCCCCTTTCAAAATTTTACTTGCTTATTATAatgtagagcagtggttcccaacaggggggtccccGCCCACAAGGAGGCCCTCAGTGAGCTCTTTGGGGGGGTtgtgtcttaaaaaaaaataaaaataaattagcagtggacaattaggaaaCTGTTTATGTTGCCTTAGTTAATTTTATCCCTTGACTGACCA
>TCONS_00012466
ggttggggttagtgtaagttgacgtacttgcaaagtttcttagcaGTATCAACAGATCTAAAGCAGACTGTATGCTAATACTCAAACAGAAgcctttttttcatttaatgaaaTGAACTGTCTTAAGGGCATTTTAAGCAAAGTgacaccagaaaagattttagaatttttatcatgtattaaattttattcttatttaattttatgtattcattcgtttgctgatttttattttttcattttatatttattattgaaatgttcacattttaatggctttaaataataaaaagatacattacattacattactcaaatggaccatcaaaatagagtgtTACCAAAACTTTGCTTATAGAATAATCAGTAGGCTTAGTGAGAAAGTAAATTGAATCGATTTTAAACTGATGTTGACTTCTCCATGCCTGTGCTCAAACTAGTTTGCATTTAATATCTAAAGAGCATGTTTTAAAAGTGGATTTGAGAAGTTTATTTGGGCATCCCTTCTTTGGAACTGGCCCCACTGGTTCCTCTGTGTGTCTTTTTGTTCAGTGTGTTTATCTTTGGGAGACTCTGTTAACACAAGGTCCAATTGTCTTCATCTGTCACTCTTTACAGAATTCAAAGAGGCTTTCTCACTCTTTGATAAAGACGGTGATGGTACAATTACTACCAAAGAGTTAGGTACTGTCATGCGCTCACTTGGGCAGAATCCCACAGAGGCTGAGCTGCAAGACATGATAAATGAAGTTGATGCTGATGGAAACGGCACGATAGACTTCCCAGAGTTCCTGACCATGATGGCAAGGAAGATGAAAGACACGGACAGTGAGGAAGAGATCAGAGAAGCATTCCGTGTCTTTGATA

Function

symbol description
calm2a Predicted to enable calcium ion binding activity and enzyme regulator activity. Predicted to act upstream of or within calcium-mediated signaling. Is expressed in several structures, including axis; mesoderm; nervous system; neural tube; and pancreas primordium. Human ortholog(s) of this gene implicated in long QT syndrome 15. Orthologous to human CALM2 (calmodulin 2).

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030804-3 Predicted to enable calcium ion binding activity and enzyme regulator activity. Predicted to act upstream of or within calcium-mediated signaling. Is expressed in several structures, including axis; mesoderm; nervous system; neural tube; and pancreas primordium. Human ortholog(s) of this gene implicated in long QT syndrome 15. Orthologous to human CALM2 (calmodulin 2).

Ensembl:

ensembl_id ENSDARG00000031427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012464 False 1744 mRNA 0.40 6 8777633 8785610
TCONS_00012465 False 437 lncRNA 0.41 2 8781046 8781570
TCONS_00012466 True 867 lncRNA 0.35 2 8781540 8782492

Neighbor

gene id symbol gene type direction distance location
XLOC_006437 NA coding downstream 1156 8760694 ~ 8776477 (-)
XLOC_006436 mcfd2 coding downstream 84773 8682176 ~ 8692860 (-)
XLOC_006435 BX004962.2 coding downstream 122186 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 coding downstream 127582 8649711 ~ 8650051 (-)
XLOC_006433 prkceb coding downstream 176449 8452354 ~ 8601184 (-)
XLOC_006439 si:ch73-105b23.6 coding upstream 13558 8799168 ~ 8815530 (-)
XLOC_006440 si:ch73-105b23.1 coding upstream 39582 8825192 ~ 8829392 (-)
XLOC_006441 plekhh2 coding upstream 61811 8847421 ~ 8892514 (-)
XLOC_006442 si:dkey-112g5.12 coding upstream 216965 9002575 ~ 9236954 (-)
XLOC_006443 si:dkey-112g5.11 coding upstream 234691 9020301 ~ 9045882 (-)
XLOC_006338 rn7sk misc downstream 7951408 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 1479131 10264741 ~ 10264905 (-)
XLOC_006428 NA non-coding downstream 547468 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1028432 7747111 ~ 7749201 (-)
XLOC_006458 NA non-coding upstream 716157 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 1291605 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 1365309 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 1464564 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 1489676 10275286 ~ 10346890 (-)

Expression


Co-expression Network