RNA id: TCONS_00012465


Basic Information

Item Value
RNA id TCONS_00012465
length 437
lncRNA type retained_intron
GC content 0.41
exon number 2
gene id XLOC_006438
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8777633 ~ 8785610 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGATCAGAGAAGCATTCCGTGTCTTTGATAAGGATGGGAATGGATACATCAGCGCAGCGGAATTGCGCCACGTCATGACAAACCTTGGAGAGAAGTTGACTGATGAAGAAGTTGATGAGATGATTCGAGAAGCAGACATTGATGGAGACGGACAGGTTAACTACGAAGGTGAGTTTgtgttaaagtttatttaaaacacaCTGTTATACAGTGTCTTAAATACTATTTAAGATGCGCAATCTCCCCCTTTCAAAATTTTACTTGCTTATTATAatgtagagcagtggttcccaacaggggggtccccGCCCACAAGGAGGCCCTCAGTGAGCTCTTTGGGGGGGTtgtgtcttaaaaaaaaataaaaataaattagcagtggacaattaggaaaCTGTTTATGTTGCCTTAGTTAATTTTATCCCTTGACTGACCA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030804-3 Predicted to enable calcium ion binding activity and enzyme regulator activity. Predicted to act upstream of or within calcium-mediated signaling. Is expressed in several structures, including axis; mesoderm; nervous system; neural tube; and pancreas primordium. Human ortholog(s) of this gene implicated in long QT syndrome 15. Orthologous to human CALM2 (calmodulin 2).

Ensembl:

ensembl_id ENSDART00000161671

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012463 lncRNA downstream 4569 8760694 ~ 8776477 (-) False XLOC_006437
TCONS_00012453 lncRNA downstream 476567 8296326 ~ 8304479 (-) True XLOC_006430
TCONS_00012450 lncRNA downstream 550881 8168713 ~ 8230165 (-) True XLOC_006428
TCONS_00013750 lncRNA downstream 1031845 7747111 ~ 7749201 (-) True XLOC_006426
TCONS_00013749 lncRNA downstream 1394254 7368997 ~ 7386792 (-) False XLOC_006423
TCONS_00013751 lncRNA upstream 221112 9002682 ~ 9006597 (-) False XLOC_006442
TCONS_00013463 lncRNA upstream 227465 9009035 ~ 9016226 (-) False XLOC_006442
TCONS_00012518 lncRNA upstream 507270 9288840 ~ 9291568 (-) False XLOC_006449
TCONS_00012516 lncRNA upstream 507270 9288840 ~ 9291685 (-) False XLOC_006449
TCONS_00012524 lncRNA upstream 574519 9356089 ~ 9362323 (-) False XLOC_006453
TCONS_00012462 mRNA downstream 4572 8760695 ~ 8776474 (-) True XLOC_006437
TCONS_00012461 mRNA downstream 88186 8683638 ~ 8692860 (-) True XLOC_006436
TCONS_00012460 mRNA downstream 88614 8682176 ~ 8692432 (-) False XLOC_006436
TCONS_00012457 mRNA downstream 179862 8452354 ~ 8601184 (-) True XLOC_006433
TCONS_00012456 mRNA downstream 334705 8375612 ~ 8446341 (-) True XLOC_006432
TCONS_00012467 mRNA upstream 17598 8799168 ~ 8815530 (-) True XLOC_006439
TCONS_00012468 mRNA upstream 43622 8825192 ~ 8829392 (-) True XLOC_006440
TCONS_00012469 mRNA upstream 65851 8847421 ~ 8892514 (-) False XLOC_006441
TCONS_00012470 mRNA upstream 66856 8848426 ~ 8888334 (-) True XLOC_006441
TCONS_00012471 mRNA upstream 221005 9002575 ~ 9061944 (-) False XLOC_006442
TCONS_00012459 other downstream 125599 8655119 ~ 8655447 (-) True XLOC_006435
TCONS_00012458 other downstream 130995 8649711 ~ 8650051 (-) True XLOC_006434
TCONS_00012435 other downstream 2460888 6288544 ~ 6320158 (-) False XLOC_006416
TCONS_00012432 other downstream 2528532 6247987 ~ 6252514 (-) True XLOC_006414
TCONS_00012410 other downstream 3788661 4976175 ~ 4992385 (-) False XLOC_006396
TCONS_00012477 other upstream 221557 9003127 ~ 9009241 (-) False XLOC_006442
TCONS_00012519 other upstream 514115 9295685 ~ 9300241 (-) True XLOC_006449
TCONS_00012525 other upstream 580240 9361810 ~ 9367689 (-) False XLOC_006453
TCONS_00012528 other upstream 580656 9362226 ~ 9368535 (-) True XLOC_006453
TCONS_00012530 other upstream 658758 9440328 ~ 9442332 (-) True XLOC_006454

Expression Profile

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