RNA id: TCONS_00012516


Basic Information

Item Value
RNA id TCONS_00012516
length 771
lncRNA type retained_intron
GC content 0.47
exon number 6
gene id XLOC_006449
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9288383 ~ 9300299 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTTTTATGTTTGGAAGGCCATTTTTGCAAttgattttttacagtttactttTACCACAGTTCTAGTACATGGCCATATAGTCTGACATAATGTCATTGTGTTCTctgtcttgtcccagaatcctctaCCAACGTTGCGTCTTGGCAAGTCATCTGATGTGCGTCAAGGTGAATTTGTGGTTGCCATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGAATCGTCAGCTCTGCTCAGAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTACATCCAGACGGACGCTACCATAGATTTTGGAAATTCAGGAGGGCCTCTCATAAACCTGGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGTATTTCCTTCGCTATTCCCTCAGACAGAGTCCGTCTCTTCCTAGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATCGAAAAGGCGTTACATTGGAGTGATGATGTTGACTTTGACCCCCAGTATAATCGAAGAACTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCCAACAGaGCCGGAATGAAGCCAGGAGATGTTATTATTGAGATCAATGGGGTAAAGGTGAACACGTCGGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACC

Function

GO: NA

KEGG:

id description
ko04210 Apoptosis
ko04214 Apoptosis - fly
ko04215 Apoptosis - multiple species
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko03110 Chaperones and folding catalysts

Ensembl:

ensembl_id ENSDART00000134358

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013463 lncRNA downstream 272614 9009035 ~ 9016226 (-) False XLOC_006442
TCONS_00013751 lncRNA downstream 282243 9002682 ~ 9006597 (-) False XLOC_006442
TCONS_00012466 lncRNA downstream 506348 8781540 ~ 8782492 (-) True XLOC_006438
TCONS_00012465 lncRNA downstream 507270 8781046 ~ 8781570 (-) False XLOC_006438
TCONS_00012463 lncRNA downstream 512363 8760694 ~ 8776477 (-) False XLOC_006437
TCONS_00012524 lncRNA upstream 64404 9356089 ~ 9362323 (-) False XLOC_006453
TCONS_00013752 lncRNA upstream 64404 9356089 ~ 9367689 (-) False XLOC_006453
TCONS_00012527 lncRNA upstream 70303 9361988 ~ 9367041 (-) False XLOC_006453
TCONS_00013753 lncRNA upstream 210082 9501767 ~ 9558425 (-) True XLOC_006458
TCONS_00012542 lncRNA upstream 586861 9878546 ~ 9886518 (-) False XLOC_006465
TCONS_00012513 mRNA downstream 4430 9261815 ~ 9284410 (-) True XLOC_006448
TCONS_00012512 mRNA downstream 4433 9261815 ~ 9284407 (-) False XLOC_006448
TCONS_00012511 mRNA downstream 4433 9261815 ~ 9284407 (-) False XLOC_006448
TCONS_00012510 mRNA downstream 31109 9240925 ~ 9257731 (-) True XLOC_006447
TCONS_00012508 mRNA downstream 31112 9240925 ~ 9257728 (-) False XLOC_006447
TCONS_00012520 mRNA upstream 11869 9303554 ~ 9311253 (-) True XLOC_006450
TCONS_00012521 mRNA upstream 22092 9313777 ~ 9318891 (-) True XLOC_006451
TCONS_00012522 mRNA upstream 41632 9333317 ~ 9335891 (-) True XLOC_006452
TCONS_00012523 mRNA upstream 48234 9339919 ~ 9367647 (-) False XLOC_006453
TCONS_00012526 mRNA upstream 70147 9361832 ~ 9367675 (-) False XLOC_006453
TCONS_00012477 other downstream 279599 9003127 ~ 9009241 (-) False XLOC_006442
TCONS_00012459 other downstream 633393 8655119 ~ 8655447 (-) True XLOC_006435
TCONS_00012458 other downstream 638789 8649711 ~ 8650051 (-) True XLOC_006434
TCONS_00012435 other downstream 2968682 6288544 ~ 6320158 (-) False XLOC_006416
TCONS_00012432 other downstream 3036326 6247987 ~ 6252514 (-) True XLOC_006414
TCONS_00012519 other upstream 4000 9295685 ~ 9300241 (-) True XLOC_006449
TCONS_00012525 other upstream 70125 9361810 ~ 9367689 (-) False XLOC_006453
TCONS_00012528 other upstream 70541 9362226 ~ 9368535 (-) True XLOC_006453
TCONS_00012530 other upstream 148643 9440328 ~ 9442332 (-) True XLOC_006454
TCONS_00012547 other upstream 788342 10080027 ~ 10114880 (-) False XLOC_006467

Expression Profile

//