XLOC_006465 (si:ch211-117n7.7)


Basic Information

Item Value
gene id XLOC_006465
gene name si:ch211-117n7.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9878544 ~ 9886579 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012541
CGGGTTGTCAATTATTGCAGACGTTTTGTAAAGTAAATAGGTTCAGTTTTGTTCACTCCTCAAAATGAGGCGAAGAGTCGATAAATCTGAAAGAAAATTTCAAGCTGCAAGACATCAACAATCAAGCCCATCACCTAGGCCTAAACATGTGCATGCAAGCTCTCAGTGGTCATGGGCGAAAATAGGACTTGTATCTCTCCTCATACTTGGTGCAACAATCCCATTTCTTCTGCATGTCTTCTctgACATTGATGACCTCAGCCGACCTTCAGATTTGGGTCTTAATCATACTATAAATTTCTATCTGAAAACTGAGGAGGGTGTGAGGGTGGGCGTGTGGCATACTGTACCTGAACATAGGTGGAAGGAGGCGCAGGGTAAGAACGTAGAGTGGTATGAGAAGGCTCTAGGGGACGGATCACCAATTTTCATGTACCTTCATGGCAATACAGGCAACAGATCTGCACCTCATCGTATTGGAGTTGCAAATATCCTAAGTGCTCTTGGATATCATGCCTTGGTGATGGACTACAGAGGTTTTGGGGACTCGACTGGTGAACCCACAGAGCCTGGACTGACTACTGATGCTCTATACTTGTATAACTGGATTAAGAAGCGCAGTGGAAACAGCCTGCTGTGTGTGTGGGGTCACTCCCTTGGTAGTGGTGTAACTACTAACACTGCAGTTAAATTACTGGAGCAAGGAAAAAAGTTTGACGGAATAATACTGGAGGGCGCATTCCTAAGCGGGCGAATGGCAGCTGATCAAGTCTTTGAACACCCTTTTACCTGGTATTATTGGAAGTTCCCGTATATTCAGTATTTCCTCTTCAATCCAATGAAAAACAACAATCTAGATTTTCCAACTGATAAAAATTTGGAAAAAATCAGATCTCCGATTATGATTCTCCACTCCGAAGATGACCATATAGTGCCCATGAGTGTGGCTCAGGAGATTTACAGAATTGCAAAAAAGGCTCAGAACTCAGATGAACGAGTCAAGCTGGTGCCATTTGATGGAAAGTATGGATACCTTCATAATGGGCTTTATAGAGACCCTGCTTTGCCAAATATCGTAAGggaGTTTGTGCAGTCACTAACAGCATGAGACGGTGTAAGAAGAGGATGATTTACAAGTAGTAATCAGCTACCTCAAACAGTTTTTTGTTATCGCTGGTGTTGTAACTGTAAACTTACAGTTCTTTTtaactacattaataaacattaacattttatgaAACTA
>TCONS_00012542
AAAATGAGGCGAAGAGTCGATAAATCTGAAAGAAAATTTCAAGCTGCAAGACATCAACAATCAAGCCCATCACCTAGGCCTAAACATGTGCATGCAAGCTCTCAGTGGTCATGGGCGAAAATAGGACTTGTATCTCTCCTCATACTTGGTGCAACAATCCCATTTCTTCTGCATGTCTTCTctgACATTGATGACCTCAGCCGACCTTCAGATTTGGGTCTTAATCATACTATAAATTTCTATCTGAAAACTGAGGAGGGTGTGAGGGTGGGCGTGTGGCATACTGTACCTGAACATAGGTGGAAGGAGGCGCAGGGTAAGAACGTAGAGTGGTATGAGAAGGCTCTAGGGGACGGATCACCAATTTTCATGTACCTTCATGGCAATACAGGCAACAGATCTGCACCTCATCGTATTGGAGTTGCAAATATCCTAAGTGCTCTTGGATATCATGCCTTGGTGATGGACTACAGAGGTTTTGGGGACTCGACTGGTGAACCCACAGAGCCTGGACTGACTACTGATGCTCTATACTTGTATAACTGGATTAAGAAGCGCAGTGGAAACAGCCTGCTGTGTGTGTGGGGTCACTCCCTTGGTAGTGGTGTAACTACTAACACTGCAGTTAAATTACTGGAGCAAGGTCAGAATGTGACAGACTTTATTTTATAATCTTGCTTATCTATGTGGCTCTTCAAagttgttgttttgctttttttatttctttaaatgtatttcttgACTGTAAGGATAAACTGCACATTTCCTGACAGGAAAAAAGTTTGACGGAATAATACTGGAGGGCGCATTCCTAAGCGGGCGAATGGCAGCTGATCAAGTCTTTGAACACCCTTTTACCTGGTATTATTGGAAGTTCCCGTATATTCAGTATTTCCTCTTCAATCCAATGAAAAACAACAATCTAGATTTTCCAACTGATAAAAATTTGGAAAAAATCAGATCTCCGATTATGATTCTCCACTCCGAAGATGACCATATAGTGCCCATGAGTGTGGCTCAGGAGATTTACAGAATTGCAAAAAAGGCTCAGAACTCAGATGAACGAGTCAAGCTGGTGCCATTTGATGGAAAGTATGGATACCTTCATAATGGGCTTTATAGAGACCCTGCTTTGCCAAATATCGTAAGggaGTTTGTGCAGTCACTAACAGCATGAGACGGTGTAAGAAGAGGATGATTTACAAGTAGTAATCAGCTACCTCAAACAGTTTTTTGTTATCGCTGGTGTTGTAACTGTAAACTTACAGTTCTTTTtaactacattaataaacattaacattttatgaAAC
>TCONS_00012543
AATTATTGCAGACGTTTTGTAAAGTAAATAGGTTCAGTTTTGTTCACTCCTCAAAATGAGGCGAAGAGTCGATAAATCTGAAAGAAAATTTCAAGCTGCAAGACATCAACAATCAAGCCCATCACCTAGGCCTAAACATGTGCATGCAAGCTCTCAGTGGTCATGGGCGAAAATAGGACTTGTATCTCTCCTCATACTTGGTGCAACAATCCCATTTCTTCTGCATGTCTTCTctgACATTGATGACCTCAGCCGACCTTCAGATTTGGGTCTTAATCATACTATAAATTTCTATCTGAAAACTGAGGAGGGTGTGAGGGTGGGCGTGTGGCATACTGTACCTGAACATAGGTGGAAGGAGGCGCAGGGTAAGAACGTAGAGTGGTATGAGAAGGCTCTAGGGGACGGATCACCAATTTTCATGTACCTTCATGGCAATACAGGCAACAGATCTGCACCTCATCGTATTGGAGTTGCAAATATCCTAAGTGCTCTTGGATATCATGCCTTGGTGATGGACTACAGAGGTTTTGGGGACTCGACTGGTGAACCCACAGAGCCTGGACTGACTACTGATGCTCTATACTTGTATAACTGGATTAAGAAGCGCAGTGGAAACAGCCTGCTGTGTGTGTGGGGTCACTCCCTTGGTAGTGGTGTAACTACTAACACTGCAGTTAAATTACTGGAGCAAGGAAAAAAGTTTGACGGAATAATACTGGAGGGCGCATTCCTAAGCGGGCGAATGGCAGCTGATCAAGTCTTTGAACACCCTTTTACCTGGGTAAGTAGCAATCAGGATCAACTTATGGTTGAACCCACCATATCTACAGTGTCACAGTGTCAGCTTGATAGTAGTGCTACAATGATCAAAATCCTAAAATT
>TCONS_00012544
GTGAAATGAGAAAAGCATACATGCACCATAAATATTACTTGtaatttgttgttttatgttaaatcttcAATGAAAGCTATAGCTAAGATTATCCTATGTTCATTTAATGAAATTCAATAGGGGAAAAACCTTTAAAGACTAAATCACATATTTTGCATTTTCCTGAATGCACTGTATCTTGGAGACTAAACCATGTGCCAAAAATCAACACTATTGACGTGTTTGTGTTCGCATTCCTCTCTGTAGCTCTCAGTGGTCATGGGCGAAAATAGGACTTGTATCTCTCCTCATACTTGGTGCAACAATCCCATTTCTTCTGCATGTCTTCTctgACATTGATGACCTCAGCCGACCTTCAGATTTGGGTCTTAATCATACTATAAATTTCTATCTGAAAACTGAGGAGGGTGTGAGGGTGGGCGTGTGGCATACTGTACCTGAACATAGGTGGAAGGAGGCGCAGGGTAAGAACGTAGAGTGGTATGAGAAGGCTCTAGGGGACGGATCACCAATTTTCATGTACCTTCATGGCAATACAGGCAACAGATCTGCACCTCATCGTATTGGAGTTGCAAATATCCTAAGTGCTCTTGGATATCATGCCTTGGTGATGGACTACAGAGGTTTTGGGGACTCGACTGGTGAACCCACAGAGCCTGGACTGACTACTGATGCTCTATACTTGTATAACTGGATTAAGAAGCGCAGTGGAAACAGCCTGCTGTGTGTGTGGGGTCACTCCCTTGGTAGTGGTGTAACTACTAACACTGCAGTTAAATTACTGGAGCAAGGAAAAAAGTTTGACGGAATAATACTGGAGGGCGCATTCCTAAGCGGGCGAATGGCAGCTGATCAAGTCTTTGAACACCCTTTTAC

Function

symbol description
si:ch211-117n7.7 Predicted to enable acylglycerol lipase activity; lysophospholipase activity; and palmitoyl-(protein) hydrolase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ABHD12B (abhydrolase domain containing 12B).

GO:

id name namespace
GO:0052651 monoacylglycerol catabolic process biological_process
GO:0006660 phosphatidylserine catabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047372 acylglycerol lipase activity molecular_function
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0004622 lysophospholipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-569 Predicted to enable acylglycerol lipase activity; lysophospholipase activity; and palmitoyl-(protein) hydrolase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ABHD12B (abhydrolase domain containing 12B).

Ensembl:

ensembl_id ENSDARG00000069828

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012541 False 1243 mRNA 0.42 13 9878544 9886579
TCONS_00012542 False 1310 lncRNA 0.41 12 9878546 9886518
TCONS_00012543 False 885 lncRNA 0.44 9 9882302 9886570
TCONS_00012544 True 876 lncRNA 0.42 8 9882407 9886278

Neighbor

gene id symbol gene type direction distance location
XLOC_006464 tm9sf3 coding downstream 3006 9855380 ~ 9875538 (-)
XLOC_006463 sfxn4 coding downstream 36738 9831010 ~ 9841806 (-)
XLOC_006462 cpxm1a coding downstream 269601 9575516 ~ 9608943 (-)
XLOC_006461 pimr152 coding downstream 332178 9543180 ~ 9546366 (-)
XLOC_006460 CR848040.3 coding downstream 353017 9524382 ~ 9525527 (-)
XLOC_006466 si:ch211-117n7.6 coding upstream 3097 9889676 ~ 9895628 (-)
XLOC_006467 NA coding upstream 190636 10077215 ~ 10118935 (-)
XLOC_006468 NA coding upstream 264340 10150919 ~ 10232078 (-)
XLOC_006469 NA coding upstream 363595 10250174 ~ 10253034 (-)
XLOC_006470 six3a coding upstream 371428 10258007 ~ 10261383 (-)
XLOC_006338 rn7sk misc downstream 9052319 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 378162 10264741 ~ 10264905 (-)
XLOC_006458 NA non-coding downstream 320119 9501767 ~ 9558425 (-)
XLOC_006437 NA non-coding downstream 1102067 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 1223097 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 1228493 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1648379 8168713 ~ 8230165 (-)
XLOC_006472 NA non-coding upstream 388707 10275286 ~ 10346890 (-)
XLOC_006476 AL928999.1 non-coding upstream 1025907 10912486 ~ 10912602 (-)

Expression


Co-expression Network