XLOC_006461 (pimr152)


Basic Information

Item Value
gene id XLOC_006461
gene name pimr152
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9543180 ~ 9546366 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012536
AGTAAAAAGCTTTTGACGTAGCAGAAACTCTCAGTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATAAAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCACctgtttctccagaagaagagctactgttgttgATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTCTAAACCGGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACAACTCTGCAGAGCTTCACTTCCCAGAAGACAACGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAACTTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCGAACCCCTTACCGGATCAGGTCTCGCAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTCTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTGCGAACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGTGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAATGTGTGCTGTTACCGCGGGGTGTTCCACCGGGATATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTCTCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTTCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGACGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgattTTTCTACACATCtgtaataaagatatattttattgAA

Function

symbol description
pimr152 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081028-8 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000110600

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012536 True 1643 mRNA 0.48 7 9543180 9546366

Neighbor

gene id symbol gene type direction distance location
XLOC_006460 CR848040.3 coding downstream 17653 9524382 ~ 9525527 (-)
XLOC_006459 pimr152 coding downstream 22175 9517816 ~ 9521005 (-)
XLOC_006457 pimr152 coding downstream 47039 9492954 ~ 9496141 (-)
XLOC_006456 pimr152 coding downstream 75236 9464758 ~ 9467944 (-)
XLOC_006455 pimr152 coding downstream 92970 9447020 ~ 9450210 (-)
XLOC_006462 cpxm1a coding upstream 29150 9575516 ~ 9608943 (-)
XLOC_006463 sfxn4 coding upstream 284644 9831010 ~ 9841806 (-)
XLOC_006464 tm9sf3 coding upstream 309014 9855380 ~ 9875538 (-)
XLOC_006465 si:ch211-117n7.7 coding upstream 332178 9878544 ~ 9886579 (-)
XLOC_006466 si:ch211-117n7.6 coding upstream 343310 9889676 ~ 9895628 (-)
XLOC_006338 rn7sk misc downstream 8716955 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 718375 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 766703 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 887733 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 893129 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1313015 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1793979 7747111 ~ 7749201 (-)
XLOC_006467 NA non-coding upstream 530849 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 604553 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 703808 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 728920 10275286 ~ 10346890 (-)
XLOC_006476 AL928999.1 non-coding upstream 1366120 10912486 ~ 10912602 (-)

Expression


Co-expression Network