Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_006338 |
| gene name | rn7sk |
| gene type | misc |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 825904 ~ 826225 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| rn7sk | Orthologous to human RN7SK (RNA component of 7SK nuclear ribonucleoprotein). |
| id | description |
|---|---|
| ZDB-NCRNAG-190123-3 | Orthologous to human RN7SK (RNA component of 7SK nuclear ribonucleoprotein). |
| ensembl_id | ENSDARG00000081270 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00012343 | True | 322 | misc_RNA | 0.58 | 1 | 825904 | 826225 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_006337 | polh | coding | downstream | 1340 | 813579 ~ 824564 (-) |
| XLOC_006336 | slit1a | coding | downstream | 187419 | 555321 ~ 638485 (-) |
| XLOC_006335 | nvl | coding | downstream | 271871 | 516258 ~ 554033 (-) |
| XLOC_006334 | NA | coding | downstream | 330987 | 489738 ~ 494917 (-) |
| XLOC_006333 | heatr5b | coding | downstream | 346774 | 450002 ~ 479130 (-) |
| XLOC_006339 | zgc:163080 | coding | upstream | 26064 | 852289 ~ 856701 (-) |
| XLOC_006340 | AL929536.6 | coding | upstream | 35505 | 861730 ~ 865193 (-) |
| XLOC_006341 | AL929536.5 | coding | upstream | 40068 | 866293 ~ 869808 (-) |
| XLOC_006342 | NA | coding | upstream | 49720 | 875945 ~ 877808 (-) |
| XLOC_006343 | BFSP1 | coding | upstream | 159217 | 985442 ~ 992458 (-) |
| XLOC_006471 | BX537274.2 | misc | upstream | 9438516 | 10264741 ~ 10264905 (-) |
| XLOC_006332 | NA | non-coding | downstream | 380015 | 443374 ~ 445889 (-) |
| XLOC_006330 | NA | non-coding | downstream | 394308 | 430289 ~ 431596 (-) |
| XLOC_006329 | NA | non-coding | downstream | 404295 | 397310 ~ 421609 (-) |
| XLOC_006328 | NA | non-coding | downstream | 442684 | 377547 ~ 383220 (-) |
| XLOC_006345 | NA | non-coding | upstream | 270259 | 1096484 ~ 1098530 (-) |
| XLOC_006346 | NA | non-coding | upstream | 293964 | 1120189 ~ 1126101 (-) |
| XLOC_006350 | NA | non-coding | upstream | 434261 | 1260486 ~ 1269605 (-) |
| XLOC_006351 | NA | non-coding | upstream | 444703 | 1270928 ~ 1341882 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| rainbow trout (Oncorhynchus mykiss) | G40413 | NA | non-coding | NC_048565.1 | CM023219.2 | 37892852 ~ 37893231 (-) |
| rainbow trout (Oncorhynchus mykiss) | G116219 | NA | non-coding | NC_048566.1 | CM023220.2 | 15295142 ~ 15304868 (+) |
| rainbow trout (Oncorhynchus mykiss) | G1687845 | NA | non-coding | NC_048584.1 | CM023238.2 | 34626718 ~ 34683245 (+) |
| eurasian perch (Perca fluviatilis) | G195087 | NA | non-coding | NC_053130.1 | CM020927.1 | 19218736 ~ 19219042 (+) |
| eurasian perch (Perca fluviatilis) | LOC120556527 | LOC102787635,LOC101476187,LOC100691227,LOC106610718 | misc | NC_053114.1 | CM020911.1 | 44791982 ~ 44915666 (-) |
| striped catfish (Pangasianodon hypophthalmus) | G53729 | NA | non-coding | NC_047597.1 | CM018543.1 | 27530576 ~ 27803450 (-) |
| bowfin (Amia calva) | G50736 | cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 | non-coding | CM030126.1 | CM030126.1 | 8357450 ~ 8360962 (-) |
| bowfin (Amia calva) | G88762 | NA | non-coding | CM030130.1 | CM030130.1 | 31988774 ~ 31989050 (-) |
| tiger barb (Puntius tetrazona) | G90232 | NA | non-coding | NC_056711.1 | CM032080.1 | 2481369 ~ 2481775 (+) |
| mexican tetra (Astyanax mexicanus) | G33833 | NA | non-coding | NC_035900.1 | CM008303.1 | 2192090 ~ 2192968 (-) |
