XLOC_006343 (BFSP1)


Basic Information

Item Value
gene id XLOC_006343
gene name BFSP1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 985442 ~ 992458 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012348
ATGACCAGCGTCTCCGTGCCTGAGGATCAGGAGCGTCTGATCGCGCAGCGGAGGGTCCCGGCCCTCAGGAGTCAGCTGGAGGAGTACAAGAGCGCCATCTGCCAGCTGCAGACGCAGAAACACCGGCTGCAGACCGAGacTTCTACACTGGAACAGACCATCAAGACCACACAGGAGAGCTACGACGATGAGATCCAGCTTTACAACGAGCAGATCGAGACCCTGAGGAAGGAGACTGAAGAGGCAGAGAAATCGCTGGAGAAATACACCAATAAGTGCCGTCAGCTGGCCGTTTACCAGAGCTCTCTGGAGAATGAGCTGGACAGATACAAGAGGATCATCGAGAACGAGGACAACAGACTGAATTCAGCAATAATCGAGACACCCATTACTCTGCTGACCAGCGGTTATAAATACACCCATAGTCTGAGCATGACACGGACGGGAAAAGATATCACCCAAGTCATTCAGGACATCACCAACGTGAAGCCCCGTCAGAAGTACTTTGCTAAGAAGGTGCTTAAAAAGAAAGAGATCACATCTCGAGGAGCGAGCGGCGGGCTGGAGGAGAAACCAGCAGAAGAGCTGGAAGAGGAGGAGAAAGGGCTGACAATGGAGGATCAGCAGCAGGAGGCGCCAAAACAGGAGCGTCAGGACGTCCCGGACGGAGCGCAGATCAGCAAAGCCTTCGACACGCTCTGCAACATCATCCGGGACCGCATGCGCCGCGTCAGGAGGCCAGAACCCATCGCCGACTTCTTCACCAAGGGACGATACGTGCTGGTGACCGGAGACTCCAGCTATCTCGACCCATGCTTTGTCTCCACCACCCCTTCCGCTAGTCATGTATTCGTGACTATTAGGGATGACATGATGCCTTACGATTCGTACAGGAGAGGCACACCCAAACCTAGCCCCCAACCGGGACCTCCAGCACCACCTTCAGATCCTGGAAAAGATGACGATGGAGGTAAATCTAAAAAAGGAGAGCCTCATCCAAAGGGGAAGGAACCAGaaccggctccggctcctcctagGCAACCTTCACCCCATCGTGGAGGAAATAAGGATCCCAGTGAACCTCCGCCCATGCCATCTTACAGCTCCATCCCGCCCGATTCAATGAGCTATGAGAAGGTGGAGGTGGTGGAGTCGGTGGAGAAGCTCTCGCCTGATAAGAAAGTCAAAGGCTATGAAGAGACCACTACGGTGGTGGAGACCATGATCGAGAAAACCAGCAGAAAGAAGCACGGTGATCGATCCACCTGA

Function

symbol description
bfsp1 Is expressed in lens.

GO: NA

KEGG:

id description
ko04812 Cytoskeleton proteins

Ensembl:

ensembl_id ENSDARG00000074919

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012348 True 1269 mRNA 0.54 5 985442 992458

Neighbor

gene id symbol gene type direction distance location
XLOC_006342 NA coding downstream 107634 875945 ~ 877808 (-)
XLOC_006341 AL929536.5 coding downstream 115634 866293 ~ 869808 (-)
XLOC_006340 AL929536.6 coding downstream 120249 861730 ~ 865193 (-)
XLOC_006339 zgc:163080 coding downstream 128741 852289 ~ 856701 (-)
XLOC_006337 polh coding downstream 160878 813579 ~ 824564 (-)
XLOC_006344 plek coding upstream 78247 1070705 ~ 1085973 (-)
XLOC_006345 NA coding upstream 104026 1096484 ~ 1098530 (-)
XLOC_006346 NA coding upstream 127731 1120189 ~ 1126101 (-)
XLOC_006347 pno1 coding upstream 132727 1125185 ~ 1130096 (-)
XLOC_006348 BX323887.1 coding upstream 144004 1136462 ~ 1175570 (-)
XLOC_006338 rn7sk misc downstream 159217 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9272283 10264741 ~ 10264905 (-)
XLOC_006334 NA non-coding downstream 490525 489738 ~ 494917 (-)
XLOC_006332 NA non-coding downstream 539553 443374 ~ 445889 (-)
XLOC_006330 NA non-coding downstream 553846 430289 ~ 431596 (-)
XLOC_006329 NA non-coding downstream 563833 397310 ~ 421609 (-)
XLOC_006350 NA non-coding upstream 268028 1260486 ~ 1269605 (-)
XLOC_006351 NA non-coding upstream 278470 1270928 ~ 1341882 (-)
XLOC_006352 NA non-coding upstream 312893 1305351 ~ 1308020 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_06175112_06195517 BFSP1 coding CI01000005 null 6173603 ~ 6196409 (+)