XLOC_006347 (pno1)


Basic Information

Item Value
gene id XLOC_006347
gene name pno1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1125185 ~ 1130096 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012351
ACCGCTCCGGGCAGCAGTACGGTCCTTTCTGTAACATGGCCGACGCCACATGTCGATGGTAAACATCTGTGCTGGAGTgtagtttttaataaattagtaaaCTATGGAATCTGTATCAGATTCGACAGCAGAAGTAAGCGCTACTATGGATTGTGATGGAAACACAGAAGCGTTTGAGAAAGTCAAAAGTAAGAAAAGAGAGAAGCGCAAGCGCGCCGCGGCGGAGATGGACACGCAGACCGAGGAGAGCAGCAGCAGCGCGCCGGTGAAAAGGCCACATTTCCCGGCCCTGTCCGGAGACCAGCTCGGGGGCGGTGTGGATGAAATGCGCAAAGTGCCGGTTCCTTCTCACCGATACACACCTCTGAAGGAAAACTGGCTGAAAATCTTCACCCCCATCGTGGAAAACCTGCAGCTCCAAGTGCGATTCAACCTCAAAACAAGACAGGTGGAGATTAAAACGTGCAAAGAAACGCAGGACATCGGTGCTCTGACCAGAGCTGCAGACTTCGTGAAGGCCTTCGTGTTAGGATTTCAGGTGGAGGATGCTCTTGCGCTGATCAGATTAGATGAACTGTTTTTGGAAACATTTGATGTCACAGATGTTAAACCTCTGAAAGGAGATCATCTGTCCAGAGCCATCGGCAGAATAGCAGGAAAAGGAGGAAAAACAAAGTTTACTATTGAGAACGTCACCAAAACCAGGATCGTGCTCGCAGACACGAAGATTCATATATTGGGGTCTTTCCAGAATATTAAAATGGCACGAACAGCAATATGCAATCTCATTCTCGGCAGTCCTCCATCTAAGGTGTATGGGAATCTGCGGGCCGTGGCCACTCGATCAGCGGAGAGATTTTAAACACTTGAAGATCAGCTCCTGCAAAACACACGGATCACAgactgacacacaaacacatctaaTTTCTATTGTTAGAGCCACATGGGCCTGAAAATGTCTATGATGAACCAGTGGACTCAACATTACTGCTGCTTCACACAATAAACACATCATGAGTGAACAGAAAGA
>TCONS_00012352
GGAATCTGTATCAGATTCGACAGCAGAAGTAAGCGCTACTATGGATTGTGATGGAAACACAGAAGCGTTTGAGAAAGTCAAAAGTAAGAAAAGAGAGAAGCGCAAGCGCGCCGCGGCGGAGATGGACACGCAGACCGAGGAGAGCAGCAGCAGCGCGCCGGTGAAAAGGCCACATTTCCCGGCCCTGTCCGGAGACCAGCTCGGGGGCGGTGTGGATGAAATGCGCAAAGTGCCGGTTCCTTCTCACCGATACACACCTCTGAAGGAAAACTGGCTGAAAATCTTCACCCCCATCGTGGAAAACCTGCAGCTCCAAGTGCGATTCAACCTCAAAACAAGACAGGTGGAGATTAAAACGTGCAAAGAAACGCAGGACATCGGTGCTCTGACCAGAGCTGCAGACTTCGTGAAGGCCTTCGTGTTAGGATTTCAGGTGGAGGTCAGTGTCAGTTATTAACGGgtgaattaataatattttgcagTGACGCTTGGTACACGTGAATGTTGTTTGCATTACATTTCTATTTGAGTTTCAAAATGATTGTTTTACTTCATAAGtaagatttatttaattaattaattagtatcATCATTTTTGGGGGTTCCAAACTAGTACTGTCAAAAAATGAAT

Function

symbol description
pno1 Predicted to enable RNA binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in immature eye; midbrain; myotome; retina; and somite. Orthologous to human PNO1 (partner of NOB1 homolog).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040426-1419 Predicted to enable RNA binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in immature eye; midbrain; myotome; retina; and somite. Orthologous to human PNO1 (partner of NOB1 homolog).

Ensembl:

ensembl_id ENSDARG00000008502

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012351 False 1030 mRNA 0.48 7 1125185 1130096
TCONS_00012352 True 631 lncRNA 0.46 3 1128258 1129991

Neighbor

gene id symbol gene type direction distance location
XLOC_006345 NA coding downstream 26655 1096484 ~ 1098530 (-)
XLOC_006344 plek coding downstream 39212 1070705 ~ 1085973 (-)
XLOC_006343 BFSP1 coding downstream 132727 985442 ~ 992458 (-)
XLOC_006342 NA coding downstream 247377 875945 ~ 877808 (-)
XLOC_006341 AL929536.5 coding downstream 255377 866293 ~ 869808 (-)
XLOC_006348 BX323887.1 coding upstream 6366 1136462 ~ 1175570 (-)
XLOC_006349 psmb1 coding upstream 12628 1142724 ~ 1151410 (-)
XLOC_006350 NA coding upstream 130390 1260486 ~ 1269605 (-)
XLOC_006351 NA coding upstream 140832 1270928 ~ 1341882 (-)
XLOC_006352 NA coding upstream 175255 1305351 ~ 1308020 (-)
XLOC_006338 rn7sk misc downstream 298960 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9134645 10264741 ~ 10264905 (-)
XLOC_006334 NA non-coding downstream 630268 489738 ~ 494917 (-)
XLOC_006332 NA non-coding downstream 679296 443374 ~ 445889 (-)
XLOC_006330 NA non-coding downstream 693589 430289 ~ 431596 (-)
XLOC_006354 NA non-coding upstream 264842 1394938 ~ 1401592 (-)
XLOC_006357 NA non-coding upstream 686994 1817090 ~ 1823981 (-)

Expression


Co-expression Network