XLOC_006349 (psmb1)


Basic Information

Item Value
gene id XLOC_006349
gene name psmb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1142724 ~ 1151410 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012354
TAGCAGCAGACGGCGCTGTGGCGGTGGCGCGCACGGGAAACAAAGGACCTGTCAACTTCCGACGGCCATATTGCGGTGATACAGCGAGTTTTGCGGAGAGGAGCTCATCATGATTTCTGCCCAGGCTTATGGAGAAAACGGCAAAATGAAAGAATATCACTATACAGGACCAGTGGAGCACAAATTCTCCCCTTATGCCTTCAACGGAGGGACAGTGCTGGCGGTGGCTGGTGAAGATTTTGCTATCGTGGCCTCAGACACACGTTTAAGTGAAGGTTACAGCATCCACAGCAGAGACTCGCCCAAATGCTACAAGCTGACAGACACTACAGTTCTGGGCTGCAGTGGTTTTCATGGAGACTGCCTGACGCTCACCAAAATCATTGAGGCCCGACTGAAGATGTACAAGCACTCGAATAACAAGAGCATGACGAGTGGAGCCATCGCAGCCATGCTGTCCACCATTCTGTACGGCAGGCGCTTCTTCCCTTACTACGTCTACAACATCATCGGCGGTCTGGATGAGGAGGGTCGAGGTGCTGTTTATAGTTTTGATCCAGTTGGTTCCTACCAGAGGGACACGTATAAAGCAGGTGGATCAGCGAGCGCAATGCTGCAGCCGCTCCTCGACAACCAGATCGGCTTCAAGAACATGGAGAACGTGGAGCATGTTCCTCTGACCCAGGAGAAGGCAGTGCAGCTGGTGAAGGACGTGTTTATTTCTGCTGCCGAGAGAGACGTGTACACCGGAGACGCCCTCAAAGTCTGCATCGTCTCCAAAGAGGGCATTAAAGAAGAGATCGTGCCGCTCAGGAAAGACTGAGACGCCTTCTCTGCACGCCAACGTTAGCCTCTTTTTGTTTCGCTCCAGATGCATCTTTCATTCTGCTCTCCTTTTTATATTCTGTCTCGAGAATAAATACCATACTGGTGTCAACATTG

Function

symbol description
psmb1 Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMB1 (proteasome 20S subunit beta 1).

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040618-2 Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMB1 (proteasome 20S subunit beta 1).

Ensembl:

ensembl_id ENSDARG00000009640

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012354 True 942 mRNA 0.51 6 1142724 1151410

Neighbor

gene id symbol gene type direction distance location
XLOC_006347 pno1 coding downstream 12628 1125185 ~ 1130096 (-)
XLOC_006346 NA coding downstream 16623 1120189 ~ 1126101 (-)
XLOC_006345 NA coding downstream 44194 1096484 ~ 1098530 (-)
XLOC_006344 plek coding downstream 56751 1070705 ~ 1085973 (-)
XLOC_006343 BFSP1 coding downstream 150266 985442 ~ 992458 (-)
XLOC_006350 NA coding upstream 109076 1260486 ~ 1269605 (-)
XLOC_006351 NA coding upstream 119518 1270928 ~ 1341882 (-)
XLOC_006352 NA coding upstream 153941 1305351 ~ 1308020 (-)
XLOC_006353 si:ch73-52p7.1 coding upstream 193866 1345276 ~ 1349922 (-)
XLOC_006354 NA coding upstream 243528 1394938 ~ 1401592 (-)
XLOC_006338 rn7sk misc downstream 316499 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9113331 10264741 ~ 10264905 (-)
XLOC_006342 NA non-coding downstream 264916 875945 ~ 877808 (-)
XLOC_006334 NA non-coding downstream 647807 489738 ~ 494917 (-)
XLOC_006332 NA non-coding downstream 696835 443374 ~ 445889 (-)
XLOC_006357 NA non-coding upstream 665680 1817090 ~ 1823981 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_04829696_04837047 PSMB1 coding CI01000005 null 4829598 ~ 4837232 (-)