CI01000005_04829696_04837047 (PSMB1)


Basic Information

Item Value
gene id CI01000005_04829696_04837047
gene name PSMB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4829598 ~ 4837232 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_04829696_04837047.mRNA
AGTTTATGATGTAAACTTTTAGCGTATTACCCAGCACCTGTGAGTAACCGAGGCTAACAGCAGACGGCGATATAAGCTACGGGACTACAAACTCTGTGACGTAATCGCACAGGAAACAAAGAACCTGTCAACTTCCGGTGGCCATATTGCGGTGATACAGCGAGTTTTAGTGAGGGAGCTTCATCATGATTTCTTCTCAAGCTTATGGAGATAATGGAAAGATGAAGGAATATCACTACAGCGGTCCAGTGGAGCATAAATTCTCTCCTTATGCCTTCAACGGAGGGACTGTGCTGGCAGTGGCTGGTGAAGACTTTGCTATCGTGGCTTCAGACACACGTTTAAGTGAGGGATACAGCATCCACAGCAGAGACTCCCCCAAATGCTACAAACTGACAGACACTACAGTGATTGGCTGCAGTGGTTTCCATGGGGACTGCTTGACGCTAACCAAAATCATTGAGGCGAGACTGAAGATGTACAAGCACTCAAACAATAAGAGCATGACCAGCGGAGCCATCGCAGCCATGCTGTCCACCATCCTGTACGGCAGGCGTTTCTTCCCGTACTACGTGTACAACATCATCGGCGGTCTCGATGAGGAGGGTCGAGGTGCCGTTTATAGTTTCGATCCAGTTGGCTCTTACCAGAGAGACTCTTATAAAGCAGGTGGATCAGCCAGTGCAATGCTGCAGCCTCTTCTTGACAACCAGATCGGATTCAAGAACATGGAGAACGTGGAGCAGCTGCCCCTGACCCTGGAGAAGGCCGTGCAGCTGGTGAAGGATGTTTTCATCTCAGCCGCTGAGAGGGACGTCTACACAGGAGATGCTCTCAAGATCTGCATCATCACCAAGGAAGGCATTCGAGAAGAGCTTGTGCCACTCAGGAAAGACTGAGACGTCTTCTCTGCCATGCCAAAATTAGCCTGTTTTTGTTTTTCTCCAGTTGAATCCTTCACTCTGCTGTTCTTTTTATATTCCTTCTCAAGAATAAA

Function

symbol description
psmb1 Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMB1 (proteasome 20S subunit beta 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02732 PSMB1; 20S proteasome subunit beta 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_04829696_04837047.mRNA True 997 mRNA 0.48 6 4829598 4837232

Neighbor

gene id symbol gene type direction distance location
CI01000005_04758130_04802713 ARFGEF3 coding downstream 26885 4758067 ~ 4802713 (-)
CI01000005_04751377_04754904 NA coding downstream 74694 4750497 ~ 4754904 (-)
CI01000005_04738995_04739378 NA coding downstream 90220 4738619 ~ 4739378 (-)
CI01000005_04731666_04732248 LHB coding downstream 97350 4731588 ~ 4732248 (-)
CI01000005_04624198_04638644 NA coding downstream 190954 4623996 ~ 4638644 (-)
CI01000005_04883863_04894229 TNFAIP3 coding upstream 45052 4882284 ~ 4894229 (-)
CI01000005_04970033_04970793 OLIG3 coding upstream 132139 4969371 ~ 4971018 (-)
CI01000005_05027999_05030374 NA coding upstream 190402 5027634 ~ 5030374 (-)
CI01000005_05157829_05163163 BAG2 coding upstream 320481 5157713 ~ 5163163 (-)
CI01000005_05164991_05171380 ZNF451 coding upstream 327759 5164991 ~ 5171380 (-)
G38711 NA non-coding downstream 14223 4812633 ~ 4815375 (-)
G38760 NA non-coding downstream 123721 4698427 ~ 4705877 (-)
G38756 NA non-coding downstream 160964 4657818 ~ 4668634 (-)
G38729 NA non-coding downstream 277568 4551765 ~ 4552030 (-)
G38725 NA non-coding downstream 280754 4548601 ~ 4548844 (-)
G38706 NA non-coding upstream 9693 4846925 ~ 4895140 (-)
G38813 NA non-coding upstream 104105 4941337 ~ 4941717 (-)
G38815 NA non-coding upstream 104694 4941926 ~ 4942172 (-)
G38819 NA non-coding upstream 111492 4948724 ~ 4948956 (-)
G38821 NA non-coding upstream 117797 4955029 ~ 4955287 (-)
G38415 NA other downstream 428488 4381238 ~ 4401110 (-)
G38510 NA other downstream 623390 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 2940322 1883222 ~ 1899867 (-)
G36628 NA other downstream 3165319 1663267 ~ 1664279 (-)
G36049 NA other downstream 3785926 1021295 ~ 1043672 (-)
G39515 NA other upstream 996560 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 1643457 6481355 ~ 6483265 (-)
G40487 NA other upstream 2358563 7195795 ~ 7196428 (-)
G40540 NA other upstream 2688989 7526221 ~ 7532148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006349 psmb1 coding NC_007124.7 CM002897.2 1142724 ~ 1151410 (-)