CI01000005_04883863_04894229 (TNFAIP3)


Basic Information

Item Value
gene id CI01000005_04883863_04894229
gene name TNFAIP3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4882284 ~ 4894229 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_04883863_04894229.mRNA
GCGTCGAGCTTTACGTCATCTTTCGAACGTAGCGTAAGCGTACAAGGCCGCTCTCGCCCCCTGGCGGACAAGACGAGAGAACGCTCGCTCATAATGGGTTGTGAAAGTGGAAAGTACCTTATGGAAATCCCCTACTGGCTTTTATGTACTGACTCTATCCTAAAGCAAGCGAGGTTGATTTCTCCCATATTGTCTCAAGCTCAAACGATCGCCATGTCCCAGGGCCAGAACTTCCTGCCCAAGTTCCTGTTCGTGAGTAACCTCCTGAAGGCCGTGAAAATCAGAGAGAGGGTGCCCAATGATGTGGTCAAGCCTTCGGCCAGCAGCGGCCTGATCCATCACCTGCGTAGCATGCATCGCTACACCCTGGAGATGATCCGCATGAGCCAGTTCCCGCAGGCCTTCCGCGAGGTCATCCAGGCGGCCATCTTGGACCGGGCCATGCAGAGCTCGCTGGAGCAGGAGAAGAGGTTGAACTGGTGCCGTGAGGTCAAGAAGCTGGTGCCACTGAGAACGAACGGTGATGGGAACTGCCTGCTTCATGCAGCCTCTCAGTACCTGCTGGGGGTTCAGGACACGGACCTGGTGCTCCGGAAGGCTCTTTATGCAGTGCTGAAAGAAACAGACACTAGTAACTTTAGAACACGCTTTCAAACAGAGCTGCTGCACTCTCAGGAGTTCACCCAGACTGGCCTGCGATACAGCACTTTGAACTGGGAGGAGGAATGGGTTAAGATTGTAGAAATGGCTTCTCCAGTGTCCAGCAGTAATGGCCTGCAGTTTGACTCTTTAGAGGATATTCACATCTTTGTGCTTTCAAATATTCTACGGAGGCCAATTATTGTTATTGCAGACCAAGTACTTAGAAGTATGAAGTCTGGTTCCTCCTTTTCACCCCTCAATGTGGGGGGCATATACCTGCCTTTGCATTGGCCTCCAGGAGAATGCTACAAATATCCCATAGTGCTTGGCTATGACTCCCAGCACTTTGCACCCCTGATCACAATCAAGGACAGTGGCCCGGAGATCCGTGCGGTGCCGTTGATAAACCCGGGACGGGGAGGGTTTGAAGAGCTTCGAGTGCACTTTCTGACAGAGAAGGAGCAGCAACAGAAGGAGAAGTTGCTGAAAGACTACCTAATGCTTATAGAAATCCCTGTCATTGGCCTGGGCTACGATCCCACACAGATTATCACTGCAGCCAGACTGGATGAAGGCAACCTACCTGAGGATATGAATCTGATGGAGGACTACCTACAACTGGTCAACCATGAATATAAGCGCTGGCAAGAGGATAAGGAGTCTTTATGGGCACCCCAATCCCAGCGTCCCCCTCCCTTCTCAGTCTCCCAACTCTCCCTTATTGAGATCCGCTGTGCCACACCCCGCTGTACCTTCTACGTCTCAGTGGACACTCAGCCCCACTGTCACGAGTGCTTCGAAAAGCGGCAGGCGGGTCGGAAGCCCGAGGCCATTTCCAGCACAAACCAAACCTCATCCTCGGACCCAGAGAGCCGAGGGAGGCTGGAGCGCTCTGTCCTGCCTAGCCCGCGTTCTGCGCCCCCTACGGCCCCCAGTCTAAGCCTTTACAGTGAGACTCATGCCATGAAGTGCAAGACACCCGGTTGCTTGTTCACACTTAGTGTGGAGCACGACGGGCTGTGTGAACGCTGCTTTACGGCGAGGCAAAACCGGTCCACCGCCAATGGGCCAACGCAAGGCCCCTCTCACGGCTGGCGCCACGGTCAGTGGGTGCCAGGCGGCCGGGAACGAGAGAAGGAGAGGGAACGAGAACGAGAAAGGGACACCGAGAGGTGTGTTATGTGTCGACAGGAGGTCTTTAGGATATTTAATGGCCTTTGCCCACCCTGCATGCAGAGGACTGCTGTTTCCGAGAGGGGGGATGCCCAGCAGCAGGAGCCTAGAACAGAGGCCTCACTGTGGGCACTACATAGGGAGACAGAGCGCACTGGCACCACCGGCCACACCTGGCAGACACCTGCTGCCCGACAATGTAAACGATCCGGCTGCCAATTCTTCGGAACACCAGAGAAGCTGGGATTCTGCACTATATGTTATCTAGACTACCAGACCAATCACCAGGCCACTCCTGCTATTGTCCAGCCCAGGCACACATCCGAGGCAGGTTTTCAGAACTGTCCGCGGTGCCGGGGTCAGGGCTGCGGTGCCGAGGGAAAGGCCATGCTGGAGGGTTACTGCAACAAGTGCTTTGTGAAGGAACAGAGTGCTAGACTCAACCAAGCTGCTAGCAGGGGCTCTCATTCCCCACCTCTTGTCACGCGGGCCTCGAAACCACGTCCACCTCCGATGCTCACCCAGGCACAGTGTCGGCGTAGTGGATGTAAGAACCTCTCCCCTGGTTGCACGGACCTCTGCCCGGACTGCCTCAGCCGCGGCCAGCGAGAGGGTCGGCGTGCCCAGGCGCCCAAAGAGAAAAGCAAACAGCGCTGCAAGACGCAGGGCTGCGATCACTACGCCAATCAAGAGAAACAAGGCTACTGTAACGAATGTGACCACTTCAAGCAGATTTACCGAGGCTGATGTTAAGAAGGCCCCAGTTCATCGCGCATGCTGGTGAACGCTCTTACACAAGGACCTTTTTGCCCAGAATCCCCCACCTGTCTTGGGCAGGGCCTAAAGAGCCCGGTGGTGCTGTAGAATTGGTGATTACCTCTCAAATGAAGTTTTGGTCATTTGTATCATGTGTATAGGACTGATGTGAGATGCTAGCATACAGAAACTAATGATACACAATGACGTCTAGTCACACACCTGTGGCGTCTGCTGTTTATATTGAACAGGGTAATTAATTGCAAACTTTCTTGAAAAACTGAGGAGAGCATGTATAAGAATCAATCAGTTTAGCAACAAATTTGACCAAAGTTAATTTACCGAAAGATATGTTGCATCGCCACTGTGGACCGCAGAAAGCCGACAGGCCTTTTGGAAGTACAGGAATAAGACGTACAGGGTATGCAGAGACCACCGAAGGACAGCATTTGATAGATTATTCATAAAATGTAGGTTAAGTGCCAATGAGAGCTCGCTAAGCAGAGCTCGAATTTCATTTCCTGCTGCACCATTTGATGTCTGCGAGCAGTACGGATCTGTTGCCTTTGAGAATGTTTTTGTTTACCATTGATCACTTTTTCGCAAGTCCTTCTTGCTCTTGAAACTATTTCACTTTTGCTTGCCTTGCTAAACTTCATATGACTTGGTCTGTTCTATTGAATGGATATGTTCATTTTTCTGTGGCTGAAAAATTCCTTAAGTGCAATGAAAACCCGATACTTGACACCCCCCCGATGTCTAGAGCAGGTGACAATAGATTAAGCTGAAGGGAATGGCCGTGCCAAAAAAAAAAAAAGAGCTTACAAATTTTTGACGACATGTCTTAAATCCCCGTCCAGATAAAAAGCCAGGCGACAACAAATAAGTCCAAACATAAACACGCCCAGGTAGGAAACGCCCGCTCCTAGATCTGTGAACTCCCTGTCCAGCCACATTCTTTTGGTTGCACTACTCTTCTTTAAACACACAATGCCTCAGTGTATTCTTTGCATATTAGTATGCACAAACTGACATTCTCTATTTGAATATTTCCGAAATATCTGCAAAGACGTACAGAGAAAAGATAGTTAGCTCCTGTGGCATCGTTTATAAAGAAATAACTGTCTGTGTTAAACATTCCCATCTTTGAAGTCCAATATTGTGCAAGCACATTTAGCTTTGTCTACTTGAGAATTAGATTCATGTGGGCCTATACAGAAATGTGCTTTGGATAAATGATACACAGAAAAATCTGCAGTCGAATCATAAATTTAAAGAGTGTCTACTCTTCAACTACTGGATCTGTTCAGTCAGTTCAGATCATCACAAACTTGCACAATACTTAATAAGCTGCTCTGGAATTAGGAACGGTACTTCTGACTTACAGTACATAGTGACATTCCAGTTATAGACCTAGAGGAATATAGATGATGAGATAGAAATTTTGTGCAACCTTTCATATAGATTATCGTATGAAAAGCCTTGTTTTTTGGTTTGTTTGGTATTTATTCACAGCAAATATTATCTGTAATGTGTTTCAAGAATTATTTATATGTGGTCCTGGAATAAA

Function

symbol description
tnfaip3 Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytoplasm and nucleus. Is expressed in intestine. Human ortholog(s) of this gene implicated in familial Behcet-like autoinflammatory syndrome. Orthologous to human TNFAIP3 (TNF alpha induced protein 3).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11859 TNFAIP3, A20, OTUD7C; tumor necrosis factor, alpha-induced protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_04883863_04894229.mRNA True 4141 mRNA 0.49 10 4882284 4894229

Neighbor

gene id symbol gene type direction distance location
CI01000005_04829696_04837047 PSMB1 coding downstream 45052 4829598 ~ 4837232 (-)
CI01000005_04758130_04802713 ARFGEF3 coding downstream 79571 4758067 ~ 4802713 (-)
CI01000005_04751377_04754904 NA coding downstream 127380 4750497 ~ 4754904 (-)
CI01000005_04738995_04739378 NA coding downstream 142906 4738619 ~ 4739378 (-)
CI01000005_04731666_04732248 LHB coding downstream 150036 4731588 ~ 4732248 (-)
CI01000005_04970033_04970793 OLIG3 coding upstream 75142 4969371 ~ 4971018 (-)
CI01000005_05027999_05030374 NA coding upstream 133405 5027634 ~ 5030374 (-)
CI01000005_05157829_05163163 BAG2 coding upstream 263484 5157713 ~ 5163163 (-)
CI01000005_05164991_05171380 ZNF451 coding upstream 270762 5164991 ~ 5171380 (-)
CI01000005_05198676_05204140 NA coding upstream 304365 5198594 ~ 5204164 (-)
G38711 NA non-coding downstream 66909 4812633 ~ 4815375 (-)
G38760 NA non-coding downstream 176407 4698427 ~ 4705877 (-)
G38756 NA non-coding downstream 213650 4657818 ~ 4668634 (-)
G38729 NA non-coding downstream 330254 4551765 ~ 4552030 (-)
G38725 NA non-coding downstream 333440 4548601 ~ 4548844 (-)
G38813 NA non-coding upstream 47108 4941337 ~ 4941717 (-)
G38815 NA non-coding upstream 47697 4941926 ~ 4942172 (-)
G38819 NA non-coding upstream 54495 4948724 ~ 4948956 (-)
G38821 NA non-coding upstream 60800 4955029 ~ 4955287 (-)
G38955 NA non-coding upstream 80758 4974987 ~ 4975189 (-)
G38415 NA other downstream 481174 4381238 ~ 4401110 (-)
G38510 NA other downstream 676076 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 2993008 1883222 ~ 1899867 (-)
G36628 NA other downstream 3218005 1663267 ~ 1664279 (-)
G36049 NA other downstream 3838612 1021295 ~ 1043672 (-)
G39515 NA other upstream 939563 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 1586460 6481355 ~ 6483265 (-)
G40487 NA other upstream 2301566 7195795 ~ 7196428 (-)
G40540 NA other upstream 2631992 7526221 ~ 7532148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location