RNA id: CI01000005_04883863_04894229.mRNA


Basic Information

Item Value
RNA id CI01000005_04883863_04894229.mRNA
length 4141
RNA type mRNA
GC content 0.49
exon number 10
gene id CI01000005_04883863_04894229
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4882284 ~ 4894229 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGTCGAGCTTTACGTCATCTTTCGAACGTAGCGTAAGCGTACAAGGCCGCTCTCGCCCCCTGGCGGACAAGACGAGAGAACGCTCGCTCATAATGGGTTGTGAAAGTGGAAAGTACCTTATGGAAATCCCCTACTGGCTTTTATGTACTGACTCTATCCTAAAGCAAGCGAGGTTGATTTCTCCCATATTGTCTCAAGCTCAAACGATCGCCATGTCCCAGGGCCAGAACTTCCTGCCCAAGTTCCTGTTCGTGAGTAACCTCCTGAAGGCCGTGAAAATCAGAGAGAGGGTGCCCAATGATGTGGTCAAGCCTTCGGCCAGCAGCGGCCTGATCCATCACCTGCGTAGCATGCATCGCTACACCCTGGAGATGATCCGCATGAGCCAGTTCCCGCAGGCCTTCCGCGAGGTCATCCAGGCGGCCATCTTGGACCGGGCCATGCAGAGCTCGCTGGAGCAGGAGAAGAGGTTGAACTGGTGCCGTGAGGTCAAGAAGCTGGTGCCACTGAGAACGAACGGTGATGGGAACTGCCTGCTTCATGCAGCCTCTCAGTACCTGCTGGGGGTTCAGGACACGGACCTGGTGCTCCGGAAGGCTCTTTATGCAGTGCTGAAAGAAACAGACACTAGTAACTTTAGAACACGCTTTCAAACAGAGCTGCTGCACTCTCAGGAGTTCACCCAGACTGGCCTGCGATACAGCACTTTGAACTGGGAGGAGGAATGGGTTAAGATTGTAGAAATGGCTTCTCCAGTGTCCAGCAGTAATGGCCTGCAGTTTGACTCTTTAGAGGATATTCACATCTTTGTGCTTTCAAATATTCTACGGAGGCCAATTATTGTTATTGCAGACCAAGTACTTAGAAGTATGAAGTCTGGTTCCTCCTTTTCACCCCTCAATGTGGGGGGCATATACCTGCCTTTGCATTGGCCTCCAGGAGAATGCTACAAATATCCCATAGTGCTTGGCTATGACTCCCAGCACTTTGCACCCCTGATCACAATCAAGGACAGTGGCCCGGAGATCCGTGCGGTGCCGTTGATAAACCCGGGACGGGGAGGGTTTGAAGAGCTTCGAGTGCACTTTCTGACAGAGAAGGAGCAGCAACAGAAGGAGAAGTTGCTGAAAGACTACCTAATGCTTATAGAAATCCCTGTCATTGGCCTGGGCTACGATCCCACACAGATTATCACTGCAGCCAGACTGGATGAAGGCAACCTACCTGAGGATATGAATCTGATGGAGGACTACCTACAACTGGTCAACCATGAATATAAGCGCTGGCAAGAGGATAAGGAGTCTTTATGGGCACCCCAATCCCAGCGTCCCCCTCCCTTCTCAGTCTCCCAACTCTCCCTTATTGAGATCCGCTGTGCCACACCCCGCTGTACCTTCTACGTCTCAGTGGACACTCAGCCCCACTGTCACGAGTGCTTCGAAAAGCGGCAGGCGGGTCGGAAGCCCGAGGCCATTTCCAGCACAAACCAAACCTCATCCTCGGACCCAGAGAGCCGAGGGAGGCTGGAGCGCTCTGTCCTGCCTAGCCCGCGTTCTGCGCCCCCTACGGCCCCCAGTCTAAGCCTTTACAGTGAGACTCATGCCATGAAGTGCAAGACACCCGGTTGCTTGTTCACACTTAGTGTGGAGCACGACGGGCTGTGTGAACGCTGCTTTACGGCGAGGCAAAACCGGTCCACCGCCAATGGGCCAACGCAAGGCCCCTCTCACGGCTGGCGCCACGGTCAGTGGGTGCCAGGCGGCCGGGAACGAGAGAAGGAGAGGGAACGAGAACGAGAAAGGGACACCGAGAGGTGTGTTATGTGTCGACAGGAGGTCTTTAGGATATTTAATGGCCTTTGCCCACCCTGCATGCAGAGGACTGCTGTTTCCGAGAGGGGGGATGCCCAGCAGCAGGAGCCTAGAACAGAGGCCTCACTGTGGGCACTACATAGGGAGACAGAGCGCACTGGCACCACCGGCCACACCTGGCAGACACCTGCTGCCCGACAATGTAAACGATCCGGCTGCCAATTCTTCGGAACACCAGAGAAGCTGGGATTCTGCACTATATGTTATCTAGACTACCAGACCAATCACCAGGCCACTCCTGCTATTGTCCAGCCCAGGCACACATCCGAGGCAGGTTTTCAGAACTGTCCGCGGTGCCGGGGTCAGGGCTGCGGTGCCGAGGGAAAGGCCATGCTGGAGGGTTACTGCAACAAGTGCTTTGTGAAGGAACAGAGTGCTAGACTCAACCAAGCTGCTAGCAGGGGCTCTCATTCCCCACCTCTTGTCACGCGGGCCTCGAAACCACGTCCACCTCCGATGCTCACCCAGGCACAGTGTCGGCGTAGTGGATGTAAGAACCTCTCCCCTGGTTGCACGGACCTCTGCCCGGACTGCCTCAGCCGCGGCCAGCGAGAGGGTCGGCGTGCCCAGGCGCCCAAAGAGAAAAGCAAACAGCGCTGCAAGACGCAGGGCTGCGATCACTACGCCAATCAAGAGAAACAAGGCTACTGTAACGAATGTGACCACTTCAAGCAGATTTACCGAGGCTGATGTTAAGAAGGCCCCAGTTCATCGCGCATGCTGGTGAACGCTCTTACACAAGGACCTTTTTGCCCAGAATCCCCCACCTGTCTTGGGCAGGGCCTAAAGAGCCCGGTGGTGCTGTAGAATTGGTGATTACCTCTCAAATGAAGTTTTGGTCATTTGTATCATGTGTATAGGACTGATGTGAGATGCTAGCATACAGAAACTAATGATACACAATGACGTCTAGTCACACACCTGTGGCGTCTGCTGTTTATATTGAACAGGGTAATTAATTGCAAACTTTCTTGAAAAACTGAGGAGAGCATGTATAAGAATCAATCAGTTTAGCAACAAATTTGACCAAAGTTAATTTACCGAAAGATATGTTGCATCGCCACTGTGGACCGCAGAAAGCCGACAGGCCTTTTGGAAGTACAGGAATAAGACGTACAGGGTATGCAGAGACCACCGAAGGACAGCATTTGATAGATTATTCATAAAATGTAGGTTAAGTGCCAATGAGAGCTCGCTAAGCAGAGCTCGAATTTCATTTCCTGCTGCACCATTTGATGTCTGCGAGCAGTACGGATCTGTTGCCTTTGAGAATGTTTTTGTTTACCATTGATCACTTTTTCGCAAGTCCTTCTTGCTCTTGAAACTATTTCACTTTTGCTTGCCTTGCTAAACTTCATATGACTTGGTCTGTTCTATTGAATGGATATGTTCATTTTTCTGTGGCTGAAAAATTCCTTAAGTGCAATGAAAACCCGATACTTGACACCCCCCCGATGTCTAGAGCAGGTGACAATAGATTAAGCTGAAGGGAATGGCCGTGCCAAAAAAAAAAAAAGAGCTTACAAATTTTTGACGACATGTCTTAAATCCCCGTCCAGATAAAAAGCCAGGCGACAACAAATAAGTCCAAACATAAACACGCCCAGGTAGGAAACGCCCGCTCCTAGATCTGTGAACTCCCTGTCCAGCCACATTCTTTTGGTTGCACTACTCTTCTTTAAACACACAATGCCTCAGTGTATTCTTTGCATATTAGTATGCACAAACTGACATTCTCTATTTGAATATTTCCGAAATATCTGCAAAGACGTACAGAGAAAAGATAGTTAGCTCCTGTGGCATCGTTTATAAAGAAATAACTGTCTGTGTTAAACATTCCCATCTTTGAAGTCCAATATTGTGCAAGCACATTTAGCTTTGTCTACTTGAGAATTAGATTCATGTGGGCCTATACAGAAATGTGCTTTGGATAAATGATACACAGAAAAATCTGCAGTCGAATCATAAATTTAAAGAGTGTCTACTCTTCAACTACTGGATCTGTTCAGTCAGTTCAGATCATCACAAACTTGCACAATACTTAATAAGCTGCTCTGGAATTAGGAACGGTACTTCTGACTTACAGTACATAGTGACATTCCAGTTATAGACCTAGAGGAATATAGATGATGAGATAGAAATTTTGTGCAACCTTTCATATAGATTATCGTATGAAAAGCCTTGTTTTTTGGTTTGTTTGGTATTTATTCACAGCAAATATTATCTGTAATGTGTTTCAAGAATTATTTATATGTGGTCCTGGAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11859 TNFAIP3, A20, OTUD7C; tumor necrosis factor, alpha-induced protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43855 lncRNA downstream 25977 4846925 ~ 4856307 (-) False G38706
TU43857 lncRNA downstream 31892 4846925 ~ 4850392 (-) False G38706
TU43863 lncRNA downstream 66909 4812633 ~ 4815375 (-) True G38711
TU43921 lncRNA downstream 176407 4698427 ~ 4705877 (-) True G38760
TU43917 lncRNA downstream 213650 4657818 ~ 4668634 (-) True G38756
TU43977 lncRNA upstream 47108 4941337 ~ 4941717 (-) True G38813
TU43979 lncRNA upstream 47697 4941926 ~ 4942172 (-) True G38815
TU43983 lncRNA upstream 54495 4948724 ~ 4948956 (-) True G38819
TU43985 lncRNA upstream 60800 4955029 ~ 4955287 (-) True G38821
TU44159 lncRNA upstream 80758 4974987 ~ 4975189 (-) True G38955
CI01000005_04829696_04837047.mRNA mRNA downstream 45052 4829598 ~ 4837232 (-) True CI01000005_04829696_04837047
CI01000005_04758130_04802713.mRNA mRNA downstream 79571 4758067 ~ 4802713 (-) True CI01000005_04758130_04802713
CI01000005_04751377_04754904.mRNA mRNA downstream 127380 4750497 ~ 4754904 (-) True CI01000005_04751377_04754904
CI01000005_04738995_04739378.mRNA mRNA downstream 142906 4738619 ~ 4739378 (-) True CI01000005_04738995_04739378
CI01000005_04731666_04732248.mRNA mRNA downstream 150036 4731588 ~ 4732248 (-) True CI01000005_04731666_04732248
CI01000005_04970033_04970793.mRNA mRNA upstream 75142 4969371 ~ 4971018 (-) True CI01000005_04970033_04970793
CI01000005_05027999_05030374.mRNA mRNA upstream 133405 5027634 ~ 5030374 (-) True CI01000005_05027999_05030374
CI01000005_05157829_05163163.mRNA mRNA upstream 263484 5157713 ~ 5163163 (-) True CI01000005_05157829_05163163
CI01000005_05164991_05171380.mRNA mRNA upstream 270762 5164991 ~ 5171380 (-) True CI01000005_05164991_05171380
CI01000005_05198676_05204140.mRNA mRNA upstream 304365 5198594 ~ 5204164 (-) True CI01000005_05198676_05204140
TU43542 other downstream 481174 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 676076 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 2993008 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 2993008 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 3218005 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 939563 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 939563 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 1586460 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 2301566 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 2631992 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011298 False 2253 mRNA 0.56 9 NC_007124.7 1182257 ~ 1208930 (+)