RNA id: CI01000005_04970033_04970793.mRNA


Basic Information

Item Value
RNA id CI01000005_04970033_04970793.mRNA
length 1520
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000005_04970033_04970793
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4969371 ~ 4971018 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGAGCAAGAGGTGCATCACCGAGCGAAATCAAACCAGGCGACACGGCCTCGGTCTACAGACAGAGAGAGAGAGAAGAGAGAGAGGCTCCGGTGGGATAAATCAGGTGATCAAGCAGGAGTGACTTGAAATAAAAACAAGACAAGAGAAAGAGACAACCTCCTACCCAAGCGCAGCCATAAAATGAATTCGGACTCCAGCTCCAGCAGAGCTTCCTCTCCAGACATGGACGGGATGTACCTCCGCGATCACCACCATCCACAAGACGGACGCCTGAACTCCGTGTCCTCCACGCAGAACGAGCTGCTCCAGAAGATGACGAGCGAGCACTTGTCCAAAACGCCCTCGGGCAGCAAGTACAAACTCAAGAAGCAGGTGACCGAGCAGGAGATCCAGCAGCTGCGCCTGAAGATCAACGGCAGGGAGCGCAAGCGCATGCACGACTTGAACCTGGCGATGGACGGGCTCCGGGAGGTCATGCCGTACGCGCACGGGCCGTCCGTGAGGAAGCTGTCCAAGATCGCCACGCTTCTGCTGGCCAGAAACTACATCCTGATGCTGACCAGCTCCCTGGACGAGATGAAGCGGCTGGTGGGCGAGATTTACGGCGGCCACCACTCGGCGTTTCACTGCGGGACGGGCGCCGCACTCGTTGATGAAGAGCACCCCTACACCACCTCTGCAGCTCGGGGGCACTTTTCAGCACTGGGCGGGCCTGCCGTGCCCCTGCACTATTTGCCAGGTGCCGCCACCTCCCCACCTCCCCATCACTTCGACAGGACTGACGAGGCTTTCCACAGAAAACAAGGAAGTGATGAAGTGAACGTGTACATTGTGAATGGACTGGACTTTGCATGATCTGTATGTCTGTTTGTTTGTTTGTTTGTTTTAGCCCTTACAAATTCACTACTTCGTCCTTGTAACAAGGATCTCATCGATTGCTTTGTAAGGTAACTACTTTACAGTTATGGAGTATGTGCTGCATAACGCACTGTAAATAACGTCAGGGCCGCGCGAGGCTCCGTGTACATTCACTGTAAATGAGAGTAAATTGTTCTATTCGCGGTGGAATCTATGTGTTTGAAGTTGCCCTGGAAACGCGAGCACTCCCCTTACACGAGTTTACCTTGGTAACCACATTTGTCTGCCAAAAAGATAATTTTTAATACTACATTAATGTGGGATCTCCTTATGTGCAAATCTCTATGCGCAAAATATGGGTATCATGGTAAACTTGCGTAAGGCTACCTGTTGATCATGTGATGTGGGGGAGTCGCGTGCATGTATCTTTTTGCAAAGGGCATGAAAAGACGAAACCCACATGTTCCTTGTAACAAGGATTGTGAAATGGCATTTCAGATGAAAACTGTACGACTATGGATTTAGTTCGCACTAGAGTGTTATTATGATTATGTTATTCCTCCATTGTCTGCCTGAGTAATAGCTGAACCTTCAGTCGTGTTATTTCTGTGTCGTATATATATATATATATAAAGAATGAAACAAAGAAAGAAAATAAA

Function

GO:

id name namespace
GO:0021520 spinal cord motor neuron cell fate specification biological_process

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43985 lncRNA downstream 14084 4955029 ~ 4955287 (-) True G38821
TU43983 lncRNA downstream 20415 4948724 ~ 4948956 (-) True G38819
TU43979 lncRNA downstream 27199 4941926 ~ 4942172 (-) True G38815
TU43977 lncRNA downstream 27654 4941337 ~ 4941717 (-) True G38813
TU43854 lncRNA downstream 74231 4854783 ~ 4895140 (-) True G38706
TU44159 lncRNA upstream 3969 4974987 ~ 4975189 (-) True G38955
TU44167 lncRNA upstream 19365 4990383 ~ 4990616 (-) True G38963
TU44182 lncRNA upstream 36490 5007508 ~ 5007722 (-) True G38978
TU44187 lncRNA upstream 41888 5012906 ~ 5013331 (-) True G38983
TU44188 lncRNA upstream 42672 5013690 ~ 5013988 (-) True G38984
CI01000005_04883863_04894229.mRNA mRNA downstream 75142 4882284 ~ 4894229 (-) True CI01000005_04883863_04894229
CI01000005_04829696_04837047.mRNA mRNA downstream 132139 4829598 ~ 4837232 (-) True CI01000005_04829696_04837047
CI01000005_04758130_04802713.mRNA mRNA downstream 166658 4758067 ~ 4802713 (-) True CI01000005_04758130_04802713
CI01000005_04751377_04754904.mRNA mRNA downstream 214467 4750497 ~ 4754904 (-) True CI01000005_04751377_04754904
CI01000005_04738995_04739378.mRNA mRNA downstream 229993 4738619 ~ 4739378 (-) True CI01000005_04738995_04739378
CI01000005_05027999_05030374.mRNA mRNA upstream 56616 5027634 ~ 5030374 (-) True CI01000005_05027999_05030374
CI01000005_05157829_05163163.mRNA mRNA upstream 186695 5157713 ~ 5163163 (-) True CI01000005_05157829_05163163
CI01000005_05164991_05171380.mRNA mRNA upstream 193973 5164991 ~ 5171380 (-) True CI01000005_05164991_05171380
CI01000005_05198676_05204140.mRNA mRNA upstream 227576 5198594 ~ 5204164 (-) True CI01000005_05198676_05204140
CI01000005_05229309_05258055.mRNA mRNA upstream 258151 5229169 ~ 5259961 (-) False CI01000005_05229309_05258055
TU43542 other downstream 568261 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 763163 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 3080095 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 3080095 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 3305092 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 862774 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 862774 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 1509671 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 2224777 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 2555203 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012355 True 2629 lncRNA 0.43 2 NC_007124.7 1305351 ~ 1308020 (-)