RNA id: TU43983


Basic Information

Item Value
RNA id TU43983
length 233
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G38819
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4948724 ~ 4948956 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAAAGTTTAAGAATAGCAGAACTGGCAGATTTTTATTTTGTACTCATACATTTTAATTGTTCTTAACTTGAAATGTTTGAGTACACTCATACATTTAACTTAAAATTATCATGTAACCCCAATGTAAACTTATTAGTGTAAAATTAGCTAGCTATAACAAGCTAATTCAAAAAATGCTAACTTGCTAATTTGTTAACATGTTAACAATAGCATGGTATAGCACTTGGTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43979 lncRNA downstream 6552 4941926 ~ 4942172 (-) True G38815
TU43977 lncRNA downstream 7007 4941337 ~ 4941717 (-) True G38813
TU43854 lncRNA downstream 53584 4854783 ~ 4895140 (-) True G38706
TU43855 lncRNA downstream 92417 4846925 ~ 4856307 (-) False G38706
TU43857 lncRNA downstream 98332 4846925 ~ 4850392 (-) False G38706
TU43985 lncRNA upstream 6073 4955029 ~ 4955287 (-) True G38821
TU44159 lncRNA upstream 26031 4974987 ~ 4975189 (-) True G38955
TU44167 lncRNA upstream 41427 4990383 ~ 4990616 (-) True G38963
TU44182 lncRNA upstream 58552 5007508 ~ 5007722 (-) True G38978
TU44187 lncRNA upstream 63950 5012906 ~ 5013331 (-) True G38983
CI01000005_04883863_04894229.mRNA mRNA downstream 54495 4882284 ~ 4894229 (-) True CI01000005_04883863_04894229
CI01000005_04829696_04837047.mRNA mRNA downstream 111492 4829598 ~ 4837232 (-) True CI01000005_04829696_04837047
CI01000005_04758130_04802713.mRNA mRNA downstream 146011 4758067 ~ 4802713 (-) True CI01000005_04758130_04802713
CI01000005_04751377_04754904.mRNA mRNA downstream 193820 4750497 ~ 4754904 (-) True CI01000005_04751377_04754904
CI01000005_04738995_04739378.mRNA mRNA downstream 209346 4738619 ~ 4739378 (-) True CI01000005_04738995_04739378
CI01000005_04970033_04970793.mRNA mRNA upstream 20415 4969371 ~ 4971018 (-) True CI01000005_04970033_04970793
CI01000005_05027999_05030374.mRNA mRNA upstream 78678 5027634 ~ 5030374 (-) True CI01000005_05027999_05030374
CI01000005_05157829_05163163.mRNA mRNA upstream 208757 5157713 ~ 5163163 (-) True CI01000005_05157829_05163163
CI01000005_05164991_05171380.mRNA mRNA upstream 216035 5164991 ~ 5171380 (-) True CI01000005_05164991_05171380
CI01000005_05198676_05204140.mRNA mRNA upstream 249638 5198594 ~ 5204164 (-) True CI01000005_05198676_05204140
TU43542 other downstream 547614 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 742516 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 3059448 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 3059448 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 3284445 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 884836 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 884836 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 1531733 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 2246839 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 2577265 7526221 ~ 7532148 (-) True G40540

Expression Profile