G39515


Basic Information

Item Value
gene id G39515
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5833792 ~ 5834539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU44761
TTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAATGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTGAAGGAAGACTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGCCGTGACGTCTGCTGGTGTTGGTCCATTGTGTTTTATCAAGTGCAAAGTCAATGCAGC
>TU44762
GACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGTGTGTATATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAATAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAATGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTGAAGGAAGACTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGCCGTGACGTCTGCTGGTGTTGGTCCATTGTGTTTTATCAAGTGCAAAGTCAATGCAGC
>TU44763
TTGTTGATTAGAGCGTACAGCTCATGAAAGTCCAAAATCCAGTATCTCAAAATATTAGAATATTTACATTTGAGTTTCATTAAATGACCATCCCTACAGTATAAATTCCGGGTATCTTTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGTGTGTATATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAATAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAATGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTGAAGGAAGACTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGCCGTGACGTCTGCTGGTGTTGGTCCATTGTGTTTTATCAAGTGCAAAGTCAATGCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU44761 False 410 lncRNA 0.33 1 5833792 5834201
TU44762 False 601 TUCP 0.44 1 5833792 5834392
TU44763 True 748 TUCP 0.42 1 5833792 5834539

Neighbor

gene id symbol gene type direction distance location
CI01000005_05769088_05775489 MLIP coding downstream 58303 5769088 ~ 5775489 (-)
CI01000005_05691428_05726724 FAM83B coding downstream 107068 5691428 ~ 5726724 (-)
CI01000005_05631288_05682552 HCRTR2, FFAR4 coding downstream 151124 5629520 ~ 5682668 (-)
CI01000005_05613083_05619171 NA coding downstream 214621 5612913 ~ 5619171 (-)
CI01000005_05229309_05258055 NA coding downstream 573831 5229074 ~ 5259961 (-)
CI01000005_05839780_05888414 LRRC1 coding upstream 4711 5838912 ~ 5888414 (-)
CI01000005_05894901_05905611 NA coding upstream 60269 5894470 ~ 5906075 (-)
CI01000005_05986614_05997729 WDR92 coding upstream 152030 5986231 ~ 5997729 (-)
CI01000005_06006736_06010521 PPP3R1.S, CANB1, PPP3R1, PPP3R1A, PPP3R1B coding upstream 171165 6005366 ~ 6010535 (-)
CI01000005_06037247_06040370 CNRIP1B, CNRIP1 coding upstream 202505 6036706 ~ 6040632 (-)
G39434 NA non-coding downstream 221868 5611054 ~ 5611924 (-)
G39246 NA non-coding downstream 258286 5574753 ~ 5575506 (-)
G39240 NA non-coding downstream 264444 5568998 ~ 5569348 (-)
G39235 NA non-coding downstream 282159 5551032 ~ 5551633 (-)
G39224 NA non-coding downstream 300554 5532963 ~ 5533238 (-)
G39452 NA non-coding upstream 116605 5950806 ~ 5959446 (-)
G39456 NA non-coding upstream 163869 5998070 ~ 5999081 (-)
G39547 NA non-coding upstream 223593 6057794 ~ 6059279 (-)
G39587 NA non-coding upstream 287427 6121628 ~ 6121833 (-)
G38415 NA other downstream 1432682 4381238 ~ 4401110 (-)
G38510 NA other downstream 1627584 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 3944516 1883222 ~ 1899867 (-)
G36628 NA other downstream 4169513 1663267 ~ 1664279 (-)
G36049 NA other downstream 4790120 1021295 ~ 1043672 (-)
CI01000005_06481721_06483251 NA other upstream 646488 6481355 ~ 6483265 (-)
G40487 NA other upstream 1361594 7195795 ~ 7196428 (-)
G40540 NA other upstream 1692020 7526221 ~ 7532148 (-)

Expression


Co-expression Network