CI01000005_05894901_05905611


Basic Information

Item Value
gene id CI01000005_05894901_05905611
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5894470 ~ 5906075 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_05894901_05905611.mRNA
AGGTGAGATGGCTTTAACCAGTATGTTAAACTCTTTTGGAGGAATCGGGAATTTCAGCTAGGGTTTCAATATAGGCATTTAGCAGCCATGACGACTCTAACCGCGTGACTGACGCGACGCAGCAGACGAGCATCTGACGCATGTGTAGTTAGGCCACCAACAATTAAATGCAATCAGTAGGAAATGTGTTTTTGTTTTTTCAGTGTACTGCAAGTTTGATCAAAGTTGTACATAATCGCTTACATTAAGTGATCAGTGTTTAGAAGTGTGATTGTTTTCTGCGAATCCGACGGGTCTTTATTTGTCAAAAAGCTTGTGCGCGGATTCTAGAATCACGAATCTAGAGGACTTTCCAACAAGGTGAAGCACATCCACTCCTATATCGTCTCCGCCCATATAAAGGTGACGAAAAAATATGGCGAGACTTTTAATAAGTGCAGGTAAGCCGCATGTGAGGAGGTGACATGGCCGAAGCTGATGTGAAAAAGGTTTTGCAGTTAAAGCATCAGCTGAAAGAATCCTGTGAAGGACACACGCTGCTGAAAATCTTGAAGAAACTTGAAGTATTGGACATTACACTTGAAATCCTCTCTGAAACTGGAATTGGAAAAGTCGTCAACTCCTTTCGCAAGCATGATGAAGCAGGAAAAGTGGCAAAAATATTGGTGAATCGATGGAAAACGCTTGTTCCAAAAGACTCTTTAAGTTTGAGAGGGAAGCCTGATGACGGCCTGACCAAAAATGAACCGCTTAATGGAGTAGTTCAAGAGAGGAGTCTAGGGGAAAACGGCCGTCTTTCAGAGAGTACCAATTCTAGAAAGAAGCCAAAAATCGAGAATTCCAGTGCTGAAAAGAAAATCTCACACAATGTTGACAATAAATGCAAAATCAAACCCAGTAAATCCAAATTCTACTTGAATGATGAAAAAAAGGATGAGCCAAAAAGAGATTCAAGTGTAAATCAGGGCTCTTGGACTCACGACTCAGCGAAGGAAAAGGCCAGCGCTGCGCATACAAAGATTTCTGGTATAACAAAAAAACAACTGAATACGAAACTTGAAAAATCTTTGAAAGCAACTCAAACGCAGGGAGACAAGAGTGGAGATGCATGCAAGAAAGAAAAGCTGGAGAAGGCCAAAGACAAATTAGTAGCAATGGAGAGTGAGAAACAGATGGATGAAGGCTTTGAAACGCCCTCTATGTCTTTTGAAGCCTACCTGAGCTATGACCTCAAGCCCCCCAAACGCAAAAAATGCTTCAGCATTACTAAAAGTCCAAAAAAGAGACTTAAAACGGCACACAAAGAGAACTCCTGTGTGTCTCTTGTGAAGGCGAGCAAGGCTGTGGCAGAAGAACCAATGACAATGGTTCCTGAGCGGTCCGTGATGGACTTGTTAAACGTTCCTTTACCAACAAGTTTTCCTGAATGTGAGGACGTTTCTCAGTATCAGTACTTCAGTGAAAAGAAAGCTGATAGAAAGATCACTGATGACTGTGAAGAGCCTCCAGTTTTCATTGGACAGAGGCTGAAGAATAAGATGCAGGTGTACTCCGGCAGTAAGATGACGTATCTGCCCTCTATGATGACGCTGTACCAGCAGTGCATCCGAGCGCTGCAGAACAACATCGACTGTACGTTACCTGACGTTATGATCTTGATGTTTGCACGAGGTGAGTTGAGTTTGTTTAAAGATGGTGGCTGTTTCACAGCTCTCTATGAGATTGGAGGAGTGCCGTTTGAAATACTGGAGCCAGTGCTGGAGCGCTGCACGCCTGAGCAGCTCCTGCGGATCGAGGAGTACAATCCAGTGTACATCGGGATGACGGACCACCTGTGGGAGAGACACTGTCAGAAAGACTTCAGGAACGCCCAGCTGGAGGAGTACGAGTCCTGGAGAGAGATGTACCTGCGCTTGTCCGAGGAGAGAGAGAGGAAACTGAAGCAGCTCACGAAGAGCATCGTCTCTGCTCACTCTGGGAAGCCCAAAGGAAGGCAGGTGAAAATGGCGTTTATTCACTCAGCTGCTAAGCCACCTAGAAATGTGCGGATCCAGCAGGAGATTCACGGCACGGCCGGCCCTGTGACACTCTCTCACCCGACAGACAGAGCCAGCAGTGTGAAGCCCAGTGAGAATCGGGGAAGATCCGGCTTTAGCGAGCCTTCCAAACCCTCCACCAACAACTCCAGCCAAGCTCAAGACCCCCGCAAGATTAAAAGAGTGGCGCCCATGATGGCGAAGTCCCTGAAGGCCTTTAAAAAGCAGCTTTGTCGCAGATGAATGCAGATGATATTGGATATAAGGCTGACCCTTATCGTTTAAATGGTTTAGAGAGATTTTTTTTTTTTTTTTTTTTCAATGTTATTTGTAATTCCACAAATGCTTACAGGTTTGATGAAATATGATCAACTTGGTACTTATTTGTATGAACAATAATTGCACTTTGAAATCAAACTGTCTCTTTGTATTGATCATGACAGACACAAATTGAATTCTGAAATTAAAACTATAATGACCACACAGTCTGTTTGCTTTGGTGCTTGTCAGTCTGAGTGTACAGTACAGTATATACTCGCACTGCATGTGTGCTGTTGAAGCTCGTGTTTGTCTCCACCTAGTGGAAGTGGGCTGCAGTTTAACTTCACTTCTGAAATGATGGATCTCTTGTTCTGAGGGGTAACAAGGGGAAAATGCATGTTGCAAATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_05894901_05905611.mRNA True 2710 mRNA 0.44 10 5894470 5906075

Neighbor

gene id symbol gene type direction distance location
CI01000005_05839780_05888414 LRRC1 coding downstream 6056 5838912 ~ 5888414 (-)
CI01000005_05769088_05775489 MLIP coding downstream 118981 5769088 ~ 5775489 (-)
CI01000005_05691428_05726724 FAM83B coding downstream 167746 5691428 ~ 5726724 (-)
CI01000005_05631288_05682552 HCRTR2, FFAR4 coding downstream 211802 5629520 ~ 5682668 (-)
CI01000005_05613083_05619171 NA coding downstream 275299 5612913 ~ 5619171 (-)
CI01000005_05986614_05997729 WDR92 coding upstream 80156 5986231 ~ 5997729 (-)
CI01000005_06006736_06010521 PPP3R1.S, CANB1, PPP3R1, PPP3R1A, PPP3R1B coding upstream 99291 6005366 ~ 6010535 (-)
CI01000005_06037247_06040370 CNRIP1B, CNRIP1 coding upstream 130631 6036706 ~ 6040632 (-)
CI01000005_06084718_06097051 NA coding upstream 178190 6084265 ~ 6097589 (-)
CI01000005_06116268_06121045 NA coding upstream 209550 6115625 ~ 6121045 (-)
G39515 NA non-coding downstream 60269 5833792 ~ 5834539 (-)
G39434 NA non-coding downstream 282546 5611054 ~ 5611924 (-)
G39246 NA non-coding downstream 318964 5574753 ~ 5575506 (-)
G39240 NA non-coding downstream 325122 5568998 ~ 5569348 (-)
G39235 NA non-coding downstream 342837 5551032 ~ 5551633 (-)
G39452 NA non-coding upstream 44731 5950806 ~ 5959446 (-)
G39456 NA non-coding upstream 91995 5998070 ~ 5999081 (-)
G39547 NA non-coding upstream 151719 6057794 ~ 6059279 (-)
G39587 NA non-coding upstream 215553 6121628 ~ 6121833 (-)
G38415 NA other downstream 1493360 4381238 ~ 4401110 (-)
G38510 NA other downstream 1688262 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 4005194 1883222 ~ 1899867 (-)
G36628 NA other downstream 4230191 1663267 ~ 1664279 (-)
CI01000005_06481721_06483251 NA other upstream 574614 6481355 ~ 6483265 (-)
G40487 NA other upstream 1289720 7195795 ~ 7196428 (-)
G40540 NA other upstream 1620146 7526221 ~ 7532148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006363 eloal coding NC_007124.7 CM002897.2 2315110 ~ 2336584 (-)