G39434


Basic Information

Item Value
gene id G39434
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5611054 ~ 5611924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU44674
CTGTATTTAAACTAGATCTGAAGAAATATAGAGATGGAAGCTGTCAGTCAAAAGTAGGTAGACTAGTTTATTCATCAAATTATCTAACATATATACATGCAACCTTTACTAACAAGAAACGATAGCCTCCAAACATGTCCGATTTAGACAACTATAATAAGGCAGGTTAAAAAAGATATTGGTAAAGATATGTGATGTTAGTACAAAGACAGCAAAAAAAAGAACATTGTCATAGATATTAAATCAGACATTGTTAATGCTCAAATGATTTGCCCTACATTTATAAAATGGCTTTTATAGTTCCAGCTTGCAGTATTTGAAGTGCAGATATACACACACATATGGCTGCACATACTACATTAATGCGATTTAAAGCAGCATATGCAATCAAGCTACTTGATGGAAGAATTCATTGTTTTAGTTATTAATATTAATAAACCTACAGATTGAATACTTGTGTCTTTTATCATATTGCTGTAGATGTTTTTCTAATACTGTGAACATGACAGTATATGATGGGAAAGATAATAAGCAAACTCTTACTGCTTTCGACCTGCGGTGACCTCTGCCAATCTGCACTCTCTCTCTCTCTCTCTGCAGTATAATTGTATTGAGCAGGATATGAATCAGTGAAGGAAAAAATGAATTACTCTCACATGTAGGGGGTAATGAGCCGCATGTCATCTATAAATGGAGGAATTTTTCTTGTGTATTTACTTGTAGTGTTTTCTTATTGACAGAAAAGGCATAGGCTCATTTCTTTGGTGTAAATGCCCACGCACAAAAAATAGATATTATAGATATTATTAAGTCTGAAACCACTTGTGAAATGTATTAATTTTATTACTATTTAGTTTGAGTGAAATATGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU44674 True 871 lncRNA 0.41 1 5611054 5611924

Neighbor

gene id symbol gene type direction distance location
CI01000005_05229309_05258055 NA coding downstream 351093 5229074 ~ 5259961 (-)
CI01000005_05198676_05204140 NA coding downstream 406890 5198594 ~ 5204164 (-)
CI01000005_05164991_05171380 ZNF451 coding downstream 439674 5164991 ~ 5171380 (-)
CI01000005_05157829_05163163 BAG2 coding downstream 447891 5157713 ~ 5163163 (-)
CI01000005_05027999_05030374 NA coding downstream 580680 5027634 ~ 5030374 (-)
CI01000005_05613083_05619171 NA coding upstream 989 5612913 ~ 5619171 (-)
CI01000005_05631288_05682552 HCRTR2, FFAR4 coding upstream 17596 5629520 ~ 5682668 (-)
CI01000005_05691428_05726724 FAM83B coding upstream 79504 5691428 ~ 5726724 (-)
CI01000005_05769088_05775489 MLIP coding upstream 157164 5769088 ~ 5775489 (-)
CI01000005_05839780_05888414 LRRC1 coding upstream 226988 5838912 ~ 5888414 (-)
G39246 NA non-coding downstream 35548 5574753 ~ 5575506 (-)
G39240 NA non-coding downstream 41706 5568998 ~ 5569348 (-)
G39235 NA non-coding downstream 59421 5551032 ~ 5551633 (-)
G39224 NA non-coding downstream 77816 5532963 ~ 5533238 (-)
G39223 NA non-coding downstream 80644 5529395 ~ 5530410 (-)
G39515 NA non-coding upstream 221868 5833792 ~ 5834539 (-)
G39452 NA non-coding upstream 338882 5950806 ~ 5959446 (-)
CI01000005_05986614_05997729 WDR92 non-coding upstream 382429 5986231 ~ 5997729 (-)
G39456 NA non-coding upstream 386146 5998070 ~ 5999081 (-)
G39547 NA non-coding upstream 445870 6057794 ~ 6059279 (-)
G38415 NA other downstream 1209944 4381238 ~ 4401110 (-)
G38510 NA other downstream 1404846 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 3721778 1883222 ~ 1899867 (-)
G36628 NA other downstream 3946775 1663267 ~ 1664279 (-)
G36049 NA other downstream 4567382 1021295 ~ 1043672 (-)
CI01000005_06481721_06483251 NA other upstream 868765 6481355 ~ 6483265 (-)
G40487 NA other upstream 1583871 7195795 ~ 7196428 (-)
G40540 NA other upstream 1914297 7526221 ~ 7532148 (-)

Expression


Co-expression Network