G39456


Basic Information

Item Value
gene id G39456
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5998070 ~ 5999081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU44701
ATTTTCATTTTTGGGTGAACTAACCCTTTAACTATCATTTTAGGGTGAACTATCCCTGTGACAGTTTCTCAATAAAAACATAACCGATATGTGCTAATGCTAACTGTCATCACTTACTTTAATCTCAACGTTTCTTGTTTTGAGATTAAATCGCACTTGAAGCTGCAGGTTTTCTACAATGGGAGTGAAAATTTTCATCCAGTTTTCTTTCAGGGGTGTGTAACGATGAGCAGGAACAGACACTTTCCGCATCTCATCTGATCCTCCCTGAGCTGGTCTCCAGATAAGGCTGGGAACTGCGGTCTCTTGGCCGCTACTGAACCCTCCGCCTGCATGTCCACTTCTGCCGCGTCCCGCTTGCGTTTGTGACTCCTCTTCGACTTCACTTTCTCAAACGCGTCTGTGTCTGTGTTTCCGTCACAGTCCATAGTAGCTGTCGCTTCTGCTGTCGTGTTTGTTACCGACTCCATCGTGAAATGAGATTTTAAAAACTACAGCTCAACAGAGATGTTTACCACGAACATGTGGCGTTTGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU44701 True 537 lncRNA 0.45 2 5998070 5999081

Neighbor

gene id symbol gene type direction distance location
CI01000005_05986614_05997729 WDR92 coding downstream 341 5986231 ~ 5997729 (-)
CI01000005_05894901_05905611 NA coding downstream 91995 5894470 ~ 5906075 (-)
CI01000005_05839780_05888414 LRRC1 coding downstream 109656 5838912 ~ 5888414 (-)
CI01000005_05769088_05775489 MLIP coding downstream 222581 5769088 ~ 5775489 (-)
CI01000005_05691428_05726724 FAM83B coding downstream 271346 5691428 ~ 5726724 (-)
CI01000005_06006736_06010521 PPP3R1.S, CANB1, PPP3R1, PPP3R1A, PPP3R1B coding upstream 6285 6005366 ~ 6010535 (-)
CI01000005_06037247_06040370 CNRIP1B, CNRIP1 coding upstream 37625 6036706 ~ 6040632 (-)
CI01000005_06084718_06097051 NA coding upstream 85184 6084265 ~ 6097589 (-)
CI01000005_06116268_06121045 NA coding upstream 116544 6115625 ~ 6121045 (-)
CI01000005_06150035_06158315 PROKR1B, PROKR1 coding upstream 149136 6148217 ~ 6158315 (-)
G39452 NA non-coding downstream 38624 5950806 ~ 5959446 (-)
G39515 NA non-coding downstream 163869 5833792 ~ 5834539 (-)
G39434 NA non-coding downstream 386146 5611054 ~ 5611924 (-)
G39246 NA non-coding downstream 422564 5574753 ~ 5575506 (-)
G39547 NA non-coding upstream 58713 6057794 ~ 6059279 (-)
G39587 NA non-coding upstream 122547 6121628 ~ 6121833 (-)
G39600 NA non-coding upstream 145044 6144125 ~ 6144906 (-)
G40158 NA non-coding upstream 217424 6216505 ~ 6221666 (-)
G40165 NA non-coding upstream 233631 6232712 ~ 6233376 (-)
G38415 NA other downstream 1596960 4381238 ~ 4401110 (-)
G38510 NA other downstream 1791862 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 4108794 1883222 ~ 1899867 (-)
G36628 NA other downstream 4333791 1663267 ~ 1664279 (-)
CI01000005_06481721_06483251 NA other upstream 481608 6481355 ~ 6483265 (-)
G40487 NA other upstream 1196714 7195795 ~ 7196428 (-)
G40540 NA other upstream 1527140 7526221 ~ 7532148 (-)

Expression


Co-expression Network