CI01000005_05839780_05888414 (LRRC1)


Basic Information

Item Value
gene id CI01000005_05839780_05888414
gene name LRRC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5838912 ~ 5888414 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_05839780_05888414.mRNA
TTTTTATTGCTGTGGAAACTTTTCCTGCATTACGGATTTATCCAGGATTCGGATCACCATCCCGTGATGTTTCACTGTATCCCCCTGTGGCGGTGCAACCGCCACATCGAGTCGATCGATAAGCGCCACTGCTCGCTCCTCTTCGTCCCGGATGAGATCTATCGCTACAGAGGCAGTTTGGAAGAGCTTCTGCTGGACGCCAACCAGCTCCGGGATTTGCCCAAGTTGAACACATACAGGAAGTTTGTGAAGAGTAACCGCAGGCAGCCATTTTTCAATTTGACTAAGCTGAGAAAACTTGGCCTGAGTGACAATGAGATCCAGCGGCTGCCGGGGGATATAGCCAACTTCAACCAGCTCGTAGAGCTAGACATCTCTCGAAATGACATTATGGAACTCCCTGAAAGCATTTCATATTGTAAAACACTCCAAGTAGCAGATTTTAGTGGAAATCCTTTGACAAGGTTGCCCGTTAGTTTTCCGGAATTACAGAATTTAACATGCCTTTCCATCAATGACATTTCTTTACAAGCACTTCCAGACAACATCGGAAACCTCTGTCATTTGGTATCACTGGAACTCAGAGAGAACTTGCTGACATATTTACCAGAGTCTCTGTCTCAACTTCATAAACTTGAAGAACTGGATGTAGGAAGCAATGAACTGTATAATTTGCCTGAGACAATAGGCTGTCTCATCAGCCTGAAAGACCTGTGGCTGGATGGAAACCAGCTGTCTGAAATACCACCGGAACTGGGTAGTATGAGAAGCCTTACGTGTCTGGATGTATCGGAGAACAAGTTAGAGCGCCTCCCAGAGGAGATGGGAAACCTTCTTTCCCTCACTGACCTGCTGGTGTCCCAGAACCTCATAGACATGCTGCCGGAGGGCATAGGAAAATTAAGACGGCTTTCAATATTGAAAGCAGATCAAAACCGATTAGTCCAACTGCCGGAGAGCATCGGCAACTGTGAAAGCCTGACAGAACTAGTGCTGACAGAGAACCAGCTGGTGAATTTGCCAAGAAGTATTGGAAAACTAAAGAAACTGTCCAACTTCAACTGTGATAGGAATCGACTAACGTCTTTACCGAAAGAGATCGGCGGCTGCTGCAGTCTGAATGTTCTGTGTGTGAGAGAGAACCGCCTGACGCGCATCCCTCCAGAGCTCTCGCAGGCTACGGAGCTGCACGTGCTCGACGTGTCTGGAAACAGGCTGCTCTATCTGCCCTTGACCCTCACTACTCTGCGACTCAAAGCGCTCTGGCTGTCGGAGAACCAGTCTCAACCCCTGCTCACCTTCCAGACGGATATGGACCCCGAGTCTGGAGTGAAGGTTCTGACCTGTGTACTGTTGCCTCAGCAACCCTGTGAGTTGGAAAACAAAGGTTCAGATAACCTGGCGCGCTGTGGGGCTCTGGAGAGTCTCGTAGAGAGTGGCGTACTGGACGACACCTGGGATGACAAAGCCACAAACAGGATGAGCACCATTCGCTTCATGGAGGACGATGATGATGAGGATGACGAAGAGAGAACGCTGTTGCGACGGGCCACTCCTCACCCCGGCGAGCTCAAGAACATGAAGAAGATGGCCGAGAGCATCCGAAAGGACATGAACGCTGCCAAAGGCCTGGATTCCAACAAAAACGAGGTCAATAATGCTGTGGAGCGAGTGACCACCACGTCTGTGTGACCGCTTTAACTCCGAGATGTCTCTTACCCAATGTGTCTCTCCCTGAAGCCCCCGCAGAGCCATTCCTCACTGTTTTCTCCCAGGGGCTGACCACCCTCATGCTCTCCTGGGACCACCAGAGCCCCTTTTCCAGCCCTGCTATCTTCATCTCTGTCAGGGGCGAGCCCCGCAACAAGGTGCCTTGTTTTCTAAAGACCTCCAGAGCAATAACCTGCGAAGGAATGCACATTTTTACTCTTCAAATCCAGTGCTTTTCATTTGCTTTTCTGACACAAAATAGGTAGTTGCACTACAAGTCTTAGCAGAATCTTTAATATAGAAATATGAAATTTATATATATATATATATATATGCTCTATTTTTTTATTTTTTCAAAACACTGGGTGCATTTCTATCTATCGGTGACACACGGAGCCCAGGCATTTTTGGACCTACTGATTTTAAAAATTCTTGTATAGTTGCTTGTGAATATTGATACTTTTATACGTGTGGCAGCTCAGGTGGTGTCAATTTTAGAAACACACAAAAATGTGTAGCCAGTTTCTTAATCAATGAACTTTCCCATCGCTTGGACTTAATTTCAGAATTCAAAAGCATTCGAACAAAGTGGCGTACACGGTTAATTCTGATCTGAACATGAGGGGGCAGCTCTGTATTTCACTACCAGGTGTTTCTTCATAACCCATTGTGTGTAAAGAACATGTTTTGTACTAAAATCCAGTAAGGGCTAATGCGGTTCAGGACCGTGAGCTGAAACACTCCGACTTTTGGACCTGTCTGACAGACCTGCACTGTGCTTTATCACCATAATAGTCCTTCTGCTGCAGTTCAAATGTGCTTCCAGCTTTCTTAAAGCAGGTACAATAAA

Function

symbol description
lrrc1 Orthologous to human LRRC1 (leucine rich repeat containing 1).

GO:

id name namespace
GO:0005176 ErbB-2 class receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_05839780_05888414.mRNA True 2560 mRNA 0.47 15 5838912 5888414

Neighbor

gene id symbol gene type direction distance location
CI01000005_05769088_05775489 MLIP coding downstream 63423 5769088 ~ 5775489 (-)
CI01000005_05691428_05726724 FAM83B coding downstream 112188 5691428 ~ 5726724 (-)
CI01000005_05631288_05682552 HCRTR2, FFAR4 coding downstream 156244 5629520 ~ 5682668 (-)
CI01000005_05613083_05619171 NA coding downstream 219741 5612913 ~ 5619171 (-)
CI01000005_05229309_05258055 NA coding downstream 578951 5229074 ~ 5259961 (-)
CI01000005_05894901_05905611 NA coding upstream 6056 5894470 ~ 5906075 (-)
CI01000005_05986614_05997729 WDR92 coding upstream 97817 5986231 ~ 5997729 (-)
CI01000005_06006736_06010521 PPP3R1.S, CANB1, PPP3R1, PPP3R1A, PPP3R1B coding upstream 116952 6005366 ~ 6010535 (-)
CI01000005_06037247_06040370 CNRIP1B, CNRIP1 coding upstream 148292 6036706 ~ 6040632 (-)
CI01000005_06084718_06097051 NA coding upstream 195851 6084265 ~ 6097589 (-)
G39515 NA non-coding downstream 4711 5833792 ~ 5834539 (-)
G39434 NA non-coding downstream 226988 5611054 ~ 5611924 (-)
G39246 NA non-coding downstream 263406 5574753 ~ 5575506 (-)
G39240 NA non-coding downstream 269564 5568998 ~ 5569348 (-)
G39235 NA non-coding downstream 287279 5551032 ~ 5551633 (-)
G39452 NA non-coding upstream 62392 5950806 ~ 5959446 (-)
G39456 NA non-coding upstream 109656 5998070 ~ 5999081 (-)
G39547 NA non-coding upstream 169380 6057794 ~ 6059279 (-)
G39587 NA non-coding upstream 233214 6121628 ~ 6121833 (-)
G38415 NA other downstream 1437802 4381238 ~ 4401110 (-)
G38510 NA other downstream 1632704 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 3949636 1883222 ~ 1899867 (-)
G36628 NA other downstream 4174633 1663267 ~ 1664279 (-)
CI01000005_06481721_06483251 NA other upstream 592275 6481355 ~ 6483265 (-)
G40487 NA other upstream 1307381 7195795 ~ 7196428 (-)
G40540 NA other upstream 1637807 7526221 ~ 7532148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006362 lrrc1 coding NC_007124.7 CM002897.2 2254238 ~ 2283176 (-)
bowfin (Amia calva) AMCG00001734 lrrc1 coding CM030143.1 CM030143.1 14435306 ~ 14461055 (-)