CI01000005_01883894_01899867


Basic Information

Item Value
gene id CI01000005_01883894_01899867
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1883222 ~ 1899867 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_01883894_01899867.mRNA
ATGGCGCAGGACGGCAAGGTGCCCAGCGATCTCTATCAGCATGTGTACTCGTTTCTCGTGGAGAATAAGTTCGCCAAAGCTGCGAAAGAGTTTTTAAAGCAGGCTAAAGTGAAACCCCAGGACCAAAATGAGGACAATCTCCTGGACATCTTCAATTTCTGGGTGAAGTCCCCAGAAACCAAAAAGCGTAAAGCGGTCACCAGTGGCCCTGCGGCAGTAAACGGACCGTCAGCCAAGAAAGCAAAGAAAGATGCAGAAAGCTCAAGTAGTGAAGACTCCAGCAGTGAGGAGGAAGCTGCAGCACCTGCTAAGAAAGCCGTACAAGTGAAAGCTACTGCTCCAAAGAAGCCTGTAGCTGCTAAAGAGAGCAGCAGCTCTGAAGACTCCAGTGACTCTGAGGATGAAGCTCCGGCTAAAACAGCTGCAAAGAAACCTGTAGCTGTGAAACCTGTGGCAGCAGCCAGGAAGAAAGACACCAGTTCCAGCAGTGAGGAGTCCGACTCTGATGACGAGCCTGCCAAAACTCCAGCAAGAGGGGCCAAGCCTGTGGCAGGGACCCCTAAGTCGGTGTCCACTCCAGCAGCTGCAGTTCAGAAGAAGCAGGAGAGTAGCAGCAGTGAGGACAGCTCGAGTGAATCTGAGGACGAGGCTCCAGCTAAGAGAGCAGTAAAAGCAGCAGTTCCGGTGAAGACCCCTCCAGCCAAACCTGCGGCCACTGCGAAGTCCAGTAGCGAGGAGTCATCCTCAGATGAAGAAGATGCCCCTCCTACAAAGAAAGCCAAGACTGCCCCAGTTAAGGCTGTGACTCCCAAAGCTACTGCTAAGAAGGACTCCTCCAGTTCTGACAGCTCTGATTCAAGTTCAGAGGATGAAGCAAAGAAGCCAGCAGCCAAAGCTGCACCGGTTAAAGCAGCCCCAGCTAAGAAAGCACCTACAAAGGTTGCTCCTGCTCAGAAAAAGGACTCTTCAAGTTCAGATTCTTCAAGCTCCGAGGATGAAGCAGCGAAGCCAGCTGTCAAAGTCACACCTGCAAAAGCTGCATCTGCTAAATCTACACCTGCTAAAGTCACTCCAGCTGCAGATGAGTCTTCATCTTCTAGCTCTGAAGACTCTGACGACTCTGACGATGAGGAGGAGGCCAAGAAACCAGCAGCTAAAGTTGTCCCGGTCAAACCTGCGCCAGCCAAGAAAATGCCAGCTAAAGTCACGCCTGCTGCAAAAGAATCTTCATCTAGCTCAGAGTCTGAGGATGACGAACCGGCCACAAAACCTACTCCAGCCAAGGCAACCCCTGCTAAAGCTGCTCCTCCAAAGACAACTCCTGCTAAGAAAGATGATTCCTCAAGTTCAGACAGCTCATCAGATGAGGAACCGCAAAAGAAAGCTGCCACCACACCGGTATCCAAACCTGGTACCCCAGCTAAACCCGCAGCTAAACCTGCAGCTAAACCAGCTGGGAGCAGTTCTGACTCGGAAACTGACAGCTCTGACTCGGAGGACGAGACTCCAGCTGCCAAGACCCCTAAACCAGCAGCAGCTAAGACCCTTAAACCTACTAAGAGCCCTGCTTCTGCTGCCAAACCACCTGCTCCAACCAATAAGGCCACAGCTGAGTCCAGCAGCAGTGATTCGGACAGTTCCAGTGAAGATGAGAAGCAAGTAAAGACTACTGTGACACCCAAAGCAGCAGCAGCTAAGCCAGCTGTGACTCCAGTTAGCGCAAAGAAAGCTGAGAGCAGTAGCTCAGATTCATCGGACAGCTCAGACTCTGAGACGGAAGCTAAGAAGACACCCGCCAAGCCTGCAGTTGCCAATGGAAAGGCTACGACACGAACCCCCACCTCTGCAGCGAAGACCCCGGCCAAAAAGACAGCAGAGTCTTCATCCTCCAGTGACAGCAGTTCTGATGAAGAGGAGCAGTCTAAAACTCCGGCTGTGAAAACGCCACCTGCTACAAAAAAACAGGCTGCCAAAGCAGACAGCAGCTCTTCTGAGGACTCTTCATCTGAGGAAGAGGAAGCGACCAAGACTCCTGTCACTTCTGCAACAAACGGCACACAGGGTAAAAGAAAAAGGAATGAGGAAAAGACAACACCCAAGAATAAAAAAATCACCACGTCCACACCTCAGACATTTCCCAAAGTCAGTCAGAAGGAAAGCAATGCTCCTTTCCGTAGAGTAAGAGACGACGAGATTGAGGTGGACCCCCGACTGGCAGACAATTCATTCGAAGCAAAGATGGGAGCCAATGGAGACTGGGGCCAGAAAGCCAACAGTGTGCTTAAATTTACCAAGGGCAAATCTTTCCGACATGAGAAGACCAAGAAGAAGCGTGGCAGTTACTGCGGTGGTGCCATCTCCACCACAGTGAACTCCATAAAATTTGACAGTGAATGAGATCACAATCTAAATGAATTTCAGAACTTTCCCCATCTGTATCCCCCGTTCATTGCTGTATCAGCTCCAGCAAGCACTGTTTTGACCCATCTACCCTCCCTTCCTGCACGACGTACTGACACTGTTCTGCCAGCATTGATTGAAGAGGGCAGGAATGGGGGGGCTGGTGAGGTGTACGGTTGTCATTATCTTCTACATTGTCCTTCATGCAGTTAGACATGGCGACCACATGGTGGCGTCAATTCATTGAGTTTTGCAATAGAAAATGTTTTGATGAGCTTAAGTAAAATCATTTTGGCTTTACTGTAAATGTTTCTAGAAGTTGGTTTTGACAAATTATGTATGGTTGTCCTAACAGGTAATTGTTAATATACTAGAAATGACATTAACTTTTTTTTTCCTTCTTCTTTTTTACGCATCTTAAAGAAATGTCATTGTTATGATTACGTTATGAGCCTATCCATGTATCTTGAGCCTGGTGATTGTCCCATTTGAAGAAGCCATGTAGTTATGACTCCGCCCACTTCAGTTTGATGGATACTGGAAGACCACCCTTAAAATAACAAGTCATCCTCATTCAATTTTAGTTTTGATATTTTATGGTTTCACTTCTGTTATGCAGAATTTTGTAATTTGGTCTCCCTTATAATCAGTCTTATAACTGTAATTAAA
>TU41481
NNNNNNNNNNNNAGCTAAATCTACCCCTGCAGCTAAAGCAGCTGAAAGTAGTTCTGATTCAGACAGCTCATCAGATGAGGAACCGCAAAAGAAAGCTGCCACCACACCGGTATCCAAACCTGGTACCCCAGCTAAACCCGCAGCTAAACCTGCAGCTAAACCAGCTGGGAGCAGTTCTGACTCGGAAACTGACAGCTCTGACTCGGAGGACGAGACTCCAGCTGCCAAGACCCCTAAACCAGCAGCAGCTAAGACCCTTAAACCTACTAAGAGCCCTGCTTCTGCTGCCAAACCACCTGCTCCAACCAATAAGGCCACAGCTGAGTCCAGCAGCAGTGATTCGGACAGTTCCAGTGAAGATGAGAAGCAAGTAAAGACTACTGTGACACCCAAAGCAGCAGCAGCTAAGCCAGCTGTGACTCCAGTTAGCGCAAAGAAAGCTGAGAGCAGTAGCTCAGATTCATCGGACAGCTCAGACTCTGAGACGGAAGCTAAGAAGACACCCGCCAAGCCTGCAGTTGCCAATGGAAAGGCTACGACACGAACCCCCACCTCTGCAGCGAAGACCCCGGCCAAAAAGACAGCAGAGTCTTCATCCTCCAGTGACAGCAGTTCTGATGAAGAGGAGCAGTCTAAAACTCCGGCTGTGAAAACGCCACCTGCTACAAAAAAACAGGCTGCCAAAGCAGACAGCAGCTCTTCTGAGGACTCTTCATCTGAGGAAGAGGAAGCGACCAAGACTCCTGTCACTTCTGCAACAAACGGCACACAGGGTAAAAGAAAAAGGAATGAGGAAAAGACAACACCCAAGAATAAAAAAATCACCACGTCCACACCTCAGACATTTCCCAAAGTCAGTCAGAAGAGTAAGAGACGACGAGATTGAGGTGGACCCCCGACTGGCAGACAATTCATTCGAAGCAAAGATGGGAGCCAATGGAGACTGGGGCCAGAAAGCCAACAGTGTGCTTAAATTTACCAAGGGCAAATCTTTCCGACATGAGAAGACCAAGAAGAAGCGTGGCAGTTACTGCGGTGGTGCCATCTCCACCACAGTGAACTCCATAAAATTTGACAGTGAATGAGATCACAATCTAAATGAATTTCAGAACTTTCCCCATCTGTATCCCCCGTTCATTGCTGTATCAGCTCCAGCAAGCACTGTTTTGACCCATCTACCCTCCCTTCCTGCACGACGTACTGACACTGTTCTGCCAGCATTGATTGAAGAGGGCAGGAATGGGGGGGCTGGTGAGGTGTACGGTTGTCATTATCTTCTACATTGTCCTTCATGCAGTTAGACATGGCGACCACATGGTGGCGTCAATTCATTGAGTTTTGCAATAGAAAATGTTTTGATGAGCTTAAGTAAAATCATTTTGGCTTTACTGTAAATGTTTCTAGAAGTTGGTTTTGACAAATTATGTATGGTTGTCCTAACAGGTAATTGTTAATATACTAGAAATGACATTAACTTTTTTTTTCCTTCTTCTTTTTTACGCATCTTAAAGAAATGTCATTGTTATGATTACGTTATGAGCCTATCCATGTATCTTGAGCCTGGTGATTGTCCCATTTGAAGAAGCCATGTAGTTATGACTCCGCCCACTTCAGTTTGATGGATACTGGAAGACCACCCTTAAAATAACAAGTCATCCTCATTCAATTTTAGTTTTGATATTTTATGGTTTCACTTCTGTTATGCAGAATTTTGTAATTTGGTCT
>TU41482
NNNNNNNNNNNNAGCTAAATCTACCCCTGCAGCTAAAGCAGCTGAAAGTAGTTCTGATTCAGACAGCTCATCAGATGAGGAACCGCAAAAGAAAGCTGCCACCACACCGGTATCCAAACCTGGTACCCCAGCTAAACCCGCAGCTAAACCTGCAGCTAAACCAGCTGGGAGCAGTTCTGACTCGGAAACTGACAGCTCTGACTCGGAGGACGAGACTCCAGCTGCCAAGACCCCTAAACCAGCAGCAGCTAAGACCCTTAAACCTACTAAGAGCCCTGCTTCTGCTGCCAAACCACCTGCTCCAACCAATAAGGCCACAGCTGAGTCCAGCAGCAGTGATTCGGACAGTTCCAGTGAAGATGAGAAGCAAGTAAAGACTACTGTGACACCCAAAGCAGCAGCAGCTAAGCCAGCTGTGACTCCAGTTAGCGCAAAGAAAGCTGAGAGCAGTAGCTCAGATTCATCGGACAGCTCAGACTCTGAGACGGAAGCTAAGAAGACACCCGCCAAGCCTGCAGTTGCCAATGGAAAGGCTACGACACGAACCCCCACCTCTGCAGCGAAGACCCCGGCCAAAAAGACAGCAGAGTCTTCATCCTCCAGTGACAGCAGTTCTGATGAAGAGGAGCAGTCTAAAACTCCGGCTGTGAAAACGCCACCTGCTACAAAAAAACAGGCTGCCAAAGCAGACAGCAGCTCTTCTGAGGACTCTTCATCTGAGGAAGAGGAAGCGACCAAGACTCCTGTCACTTCTGCAACAAACGGCACACAGGGTAAAAGAAAAAGGAATGAGGAAAAGACAACACCCAAGAATAAAAAAATCACCACGTCCACACCTCAGACATTTCCCAAAGTCAGTCAGAAGGAAAGCAATGCTCCTTTCCGTAGAGTAAGAGACGACGAGATTGAGGTGGACCCCCGACTGGCAGACAATTCATTCGAAGCAAAGATGGGAGCCAATGGAGACTGGGGCCAGAAAGCCAACAGTGTGCTTAAATTTACCAAGGGCAAATCTTTCCGACATGAGAAGACCAAGAAGAAGCGTGGCAGTTACTGCGGTGGTGCCATCTCCACCACAGTGAACTCCATAAAATTTGACAGTGAATGAGATCACAATCTAAATGAATTTCAGAACTTTCCCCATCTGTATCCCCCGTTCATTGCTGTATCAGCTCCAGCAAGCACTGTTTTGACCCATCTACCCTCCCTTCCTGCACGACGTACTGACACTGTTCTGCCAGCATTGATTGAAGAGGGCAGGAATGGGGGGGCTGGTGAGGTGTACGGTTGTCATTATCTTCTACATTGTCCTTCATGCAGTTAGACATGGCGACCACATGGTGGCGTCAATTCATTGAGTTTTGCAATAGAAAATGTTTTGATGAGCTTAAGTAAAATCATTTTGGCTTTACTGTAAATGTTTCTAGAAGTTGGTTTTGACAAATTATGTATGGTTGTCCTAACAGGTAATTGTTAATATACTAGAAATGACATTAACTTTTTTTTTCCTTCTTCTTTTTTACGCATCTTAAAGAAATGTCATTGTTATGATTACGTTATGAGCCTATCCATGTATCTTGAGCCTGGTGATTGTCCCATTTGAAGAAGCCATGTAGTTATGACTCCGCCCACTTCAGTTTGATGGATACTGGAAGACCACCCTTAAAATAACAAGTCATCCTCATTCAATTTTAGTTTTGATATTTTATGGTTTCACTTCTGTTATGCAGAATTTTGTAATTTGGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_01883894_01899867.mRNA False 3069 mRNA 0.48 13 1883222 1899867
TU41481 False 1725 TUCP 0.35 4 1883254 1889276
TU41482 True 1748 TUCP 0.46 4 1883254 1889276

Neighbor

gene id symbol gene type direction distance location
CI01000005_01761513_01769840 NA coding downstream 113371 1761187 ~ 1769851 (-)
CI01000005_01723641_01729676 NA coding downstream 152886 1723338 ~ 1730336 (-)
CI01000005_01677318_01687512 MCU coding downstream 195623 1677161 ~ 1687599 (-)
CI01000005_01674196_01674495 NA coding downstream 208727 1673439 ~ 1674495 (-)
CI01000005_01648294_01654249 OIT3 coding downstream 228973 1647991 ~ 1654249 (-)
CI01000005_01924855_01938284 NA coding upstream 24811 1924678 ~ 1938284 (-)
CI01000005_01944678_01957016 NA coding upstream 44094 1943961 ~ 1957016 (-)
CI01000005_02163205_02167196 NA coding upstream 262561 2162428 ~ 2167196 (-)
CI01000005_02240553_02245892 NA coding upstream 339970 2239837 ~ 2246835 (-)
CI01000005_02312170_02375877 MEIS2, MEIS1 coding upstream 412303 2312170 ~ 2375877 (-)
G36525 NA non-coding downstream 3736 1878561 ~ 1879486 (-)
G36640 NA non-coding downstream 104136 1778873 ~ 1779086 (-)
G36631 NA non-coding downstream 114875 1767923 ~ 1768347 (-)
G36535 NA non-coding downstream 162626 1705218 ~ 1720596 (-)
G36630 NA non-coding downstream 218076 1664878 ~ 1665146 (-)
G36523 NA non-coding upstream 13978 1913845 ~ 1917676 (-)
G36517 NA non-coding upstream 22548 1922415 ~ 2001557 (-)
G36690 NA non-coding upstream 116402 2016269 ~ 2016491 (-)
G36692 NA non-coding upstream 118552 2018419 ~ 2018633 (-)
G36628 NA other downstream 218943 1663267 ~ 1664279 (-)
G36049 NA other downstream 839550 1021295 ~ 1043672 (-)
G38510 NA other upstream 2304978 4204845 ~ 4206208 (-)
G38415 NA other upstream 2481371 4381238 ~ 4401110 (-)
G39515 NA other upstream 3933925 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 4580822 6481355 ~ 6483265 (-)
G40487 NA other upstream 5295928 7195795 ~ 7196428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location