CI01000005_02312170_02375877 (MEIS2, MEIS1)


Basic Information

Item Value
gene id CI01000005_02312170_02375877
gene name MEIS2, MEIS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 2312170 ~ 2375877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_02312170_02375877.mRNA
GTGTGTGTGCAGTACGAAGATATACCCCACTATGGGATGGACGGAGTAGGAATCCCGAGCACGATGTACGGGGACCCGCACGCTGCCAGATCCATGCAGGCTGTTCACCTGAATCACGGGCCCCAGCTCCACTCCCACCAGTACCCGCACACAGCCCACACCAACGCCATGCCGCCCAGCATGGGCTCATCCGTCAATGACGCTCTAAAAAGAGATAAAGACGCCATTTACGGGCACCCTCTGTTCCCACTTCTAGCACTGATTTTTGAGAAATGTGAATTAGCCACTTGCACACCTAGAGAGCCCGGTGTGGCTGGGGGCGATGTGTGTTCATCAGAGTCTTTCAATGAAGATATAGCAGTGTTTGCAAAACAGATTCGAGCAGAAAAGCCGCTATTTTCATCAAATCCTGAGCTGGATAATTTGATGATACAAGCCATTCAAGTTTTACGGTTTCATCTTTTGGAGCTCGAAAAGGTACATGAACTTTGTGACAATTTCTGTCATCGGTACATCAGCTGTTTGAAGGGAAAGATGCCCATCGACTTGGTTATAGACGACAGAGAAGGAGGATCAAAATCAGACAGTGAAGAAATTACAAGATCATCGGGGCCCCTTGATCAGACCTCATGGAACAGAGACCATGATGATACAGCTTCTACACGCTCCGGGGGCACACCGGGACCATCCAGCGGAGGACACACATCGCACAGCGGTGACAACAGCAGCGAACAAGGTGACGGGCTGGACAACAGTGTGGCGTCACCCAGCACAGGAGATGATGACGACCCCGACAAGGAAAAGAAGAGGAATAAAAAACGGGGCATCTTCCCTAAAGTGGCGACCAACATTATGAGGGCATGGCTCTTCCAGCACTTGACGCACCCCTACCCTTCAGAAGAACAGAAAAAGCAACTGGCACAAGACACCGGACTCACTATACTACAAGTGAACAACTGGTTCATTAACGCAAGAAGAAGAATAGTGCAGCCCATGATCGACCAGTCCAACCGAGCAGGCAATCAAGGAGCTCCCTACAACCCAGATGGTCAACCCATGGGAGGCTTCGTGATGGACGGCCAGCAGCACATGGGAATCAGACCACCTGGACTACAAGGCATGCCAGGGGATTACCTGTCACACAGTGGCCCGGTGGGTATGGCTATGGGGCAACCAGGCTACAGTGCCTCCCAGATGCCCCACCACCCTGCTCAATTGCGGCACGGCCCTCCCATGCGTTCCTACATCCCTGGACACCCCCACCACCCAGCGATGTTAATGCACGGAGGACCGCCACACCCTGCCATGCCCATGTCAGCCTCTAGCCCCCCTATGTTCAATCCAGGAGACCCTAACATGGGAGGACAATTCATGGACATCCATGCCCAG

Function

symbol description
meis1 Enables DNA binding activity. Predicted to be involved in several processes, including angiogenesis; animal organ development; and negative regulation of myeloid cell differentiation. Predicted to act upstream of or within several processes, including hemopoiesis; lens morphogenesis in camera-type eye; and negative regulation of neuron differentiation. Predicted to be located in nucleus. Predicted to be part of chromatin.
meis2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of cardiac muscle myoblast proliferation; positive regulation of mitotic cell cycle; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus and perinuclear region of cytoplasm. Predicted to be part of chromatin. Implicated in cleft palate, cardiac defects, and intellectual disabillity.

GO:      GO:0001077, GO:0003677, GO:0002089, GO:0001525, GO:0007275, GO:0043565, GO:0005634, GO:0045665, GO:0048514, GO:0006366, GO:0007626, GO:0005667, GO:0060216, GO:0035855, GO:0046982, GO:0003705, GO:0006355, GO:0045638, GO:0006357, GO:0045944, GO:0006351, GO:0005515, GO:0030097, GO:0000978, GO:0003682

KEGG:

id description
K15613 MEIS1; homeobox protein Meis1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_02312170_02375877.mRNA True 1389 mRNA 0.53 11 2312170 2375877

Neighbor

gene id symbol gene type direction distance location
CI01000005_02240553_02245892 NA coding downstream 65335 2239837 ~ 2246835 (-)
CI01000005_02163205_02167196 NA coding downstream 144974 2162428 ~ 2167196 (-)
CI01000005_01944678_01957016 NA coding downstream 355154 1943961 ~ 1957016 (-)
CI01000005_01924855_01938284 NA coding downstream 373886 1924678 ~ 1938284 (-)
CI01000005_01883894_01899867 NA coding downstream 412303 1883222 ~ 1899867 (-)
CI01000005_02403966_02437498 NA coding upstream 28078 2403955 ~ 2437539 (-)
CI01000005_02619187_02639895 SPRED2B, SPRED2 coding upstream 242208 2618085 ~ 2639895 (-)
CI01000005_02669952_02699226 ACTR2B, ACTR2, ACTR2.S, ACTR2A coding upstream 293237 2669114 ~ 2699226 (-)
CI01000005_02761667_02765877 DLL1, DLD coding upstream 385395 2761272 ~ 2766340 (-)
CI01000005_02885300_02890664 NA coding upstream 509053 2884930 ~ 2890664 (-)
G37513 NA non-coding downstream 18209 2293701 ~ 2293961 (-)
G37511 NA non-coding downstream 20768 2291151 ~ 2291402 (-)
G36740 NA non-coding downstream 192511 2041337 ~ 2119659 (-)
G36741 NA non-coding downstream 267210 2043622 ~ 2044960 (-)
G36692 NA non-coding downstream 293537 2018419 ~ 2018633 (-)
G37468 NA non-coding upstream 4617 2380494 ~ 2382360 (-)
G37536 NA non-coding upstream 29317 2405194 ~ 2405446 (-)
G37544 NA non-coding upstream 38977 2414854 ~ 2415233 (-)
G37554 NA non-coding upstream 49135 2425012 ~ 2425288 (-)
G37688 NA non-coding upstream 218517 2594394 ~ 2594620 (-)
G36628 NA other downstream 647891 1663267 ~ 1664279 (-)
G36049 NA other downstream 1268498 1021295 ~ 1043672 (-)
G38510 NA other upstream 1828968 4204845 ~ 4206208 (-)
G38415 NA other upstream 2005361 4381238 ~ 4401110 (-)
G39515 NA other upstream 3457915 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 4104812 6481355 ~ 6483265 (-)
G40487 NA other upstream 4819918 7195795 ~ 7196428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001642 meis1b,LOC106613898,LOC104951697,LOC107551348 coding CM030143.1 CM030143.1 10491504 ~ 10504479 (-)