CI01000005_02761667_02765877 (DLL1, DLD)


Basic Information

Item Value
gene id CI01000005_02761667_02765877
gene name DLL1, DLD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 2761272 ~ 2766340 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_02761667_02765877.mRNA
ACGCACAATCCAGTCAGTCTCTCACATGGAAACAAGAGTACAGGAGGAAAATTTGGATCATCACGCCAATTGTATAAACGGAAAATAAGCGAAACACGCGTAGATAACCCTGTTCTTGGGTTTTCTGCATTTTTTTCCGGCTTCCTAAACTAACCGCAAGTGGACTGCAAACTTTTGACAACTTGGAGTATTCGTCTTCTGAGGGAATTTCCTGTTCGTCCCCATTTTTGCGCATCAGGGTTTCCTCTTTATATTCGTATTTGGGATTTAATTGCTTGATTTTTTTTTCAAGGGGGACTTTAATGGGCTTGCATGAGCAGATAAAGTGAACGCAACAGAGCATCAACCAGAGCTGCCTCCCACTGAGTGGAGAACTTCGAGTCTCAATGATTTATTGAGACACGGTCTCATACAATCGCCTGGCCCGTGGAAGCTTAACAACAAAGTTCAGATCATCTCCACCATGGGACGACTTATGATAGCGGCTTTGCTGTGTGTCGTGATAAGCCAGGGGTTTTGTTCTGGGGTTTTCGAGTTAAAGTTGCAGGAGTTTCTTAACAAGAAAGGGGTGATAGGCAACGCAAACTGCTGCAAAGGATCCGCGCCAGAGGCTCAGCAGTGTGAATGCAAAACCTTTTTTAGGATTTGCCTGAAACATTACCAAGCCAATGTATCTCCAGATCCTCCATGCACCTACGGTGGCGCCGTTACCCCAGTGCTGGGATCAAACTCCTTCCAAGTTCCCGAGAGCTTTCCTGACAGCTCATTCACCAACCCCATTCAGTTCTCTTTTGGATTCACATGGCCGGGAACATTTTCGCTGATTATCGAAGCGTTGCACACCGATTCCAACGATGATCTGTCGACAGAAAACCCAGAACGTCTCATCAGTCGTATGACCACCCAGAGGCATCTAACAGTGGGCGAGGATTGGTCCCAAGATCTACAGGTTGGTGGGAGGACAGAGCTGAAATACTCGTACAGATTCGTTTGTGACGAGCATTACTACGGCGAGGGCTGCTCTGTCTTCTGCCGCCCCCGCGACGACACTTTCGGCCACTTTACCTGCGGAGAACGCGGAGAAATCATCTGCAACTCCGGATGGAAAGGACAGTACTGCACAGAACCAATCTGTCTTCCGGGATGCGACGAAGACCATGGATATTGCGACAAACCTGGTGAATGCAAATGCAGAGTGGGATTTAGTGGAAAGTACTGTGACGACTGCATCCGCTATCCGGGCTGCTTGCATGGCACCTGCCAACAGCCATGGCAATGCAACTGCCAAGAGGGTTGGGGAGGCCTCTTCTGTAACCAAGATCTTAATTACTGCACACATCACAAACCGTGCCAGAATGGGGCCACTTGCACCAACACTGGCCAGGGAAGCTACACCTGCTCATGCAGACCTGGCTTCACCGGAGACAGCTGTGAGATTGAGGACTTGAGTTCTGTTCAATGTCCTAACATCTTCTCAATCGTTCCTTGGATTTCACAGGATCTTGAAAACACCTACAGCTGCACATGTCCTCCTGGTTTCTATGGAAGAAACTGCGAGCTGAGCGCCATGACATGCGCCGACGGCCCCTGCTTCAACGGTGGACGCTGCGCTGACAACCCTGATGGAGGATACTTCTGTCAGTGCCCGATGGGCTATGCTGGTTTCAACTGTGAAAAGAAGATTGATCACTGCAGCTCCAACCCTTGCTCGAATGGTGCCCAGTGTCTAGATCTTGTGGACTCCTATCTTTGTCAGTGTCCTGAGGGTTTCACCGGAACGCACTGTGAAGACAACATCGATGAGTGTGCCGCCTATCCCTGTCAGAATGGCGGCACATGCCAAGATGGACTCAACGACTACACCTGCACCTGCCCACCTGGATACACCAGCAAGAACTGCACCTCTGCGGTCAACAAGTGCGTCCACAACCCGTGCCACAACGGTGCCACTTGTCACGAGAGGGACGGACGCTATGTGTGCGCTTGCATCTCGGGTTACGGAGGACGAAACTGTCAGTTCTTGCTCCCAGAGAACTCACAGGGACAAGCCGTTGTTGAGGGAGCCGACAAAAGGTACTCTTACGCCGAGGACGATGGTGCCTTTCCTTGGACGGCGGTTTGTGCTGGGATTATTTTAGTGCTTTTAGTCCTGATCGGCGGCGCCGTCTTGGTCGTCTACATCCGTCTTAAGCTGCAGCGGAGGAGCCAGCAAGTCGATAGCCATAGCGAGATCGAGACCATGAACAACCTGACCAACAACTGCAGCCGAGACAAGGACTTGTCCGTAAGTGTCATCGGAACCACGCAAGTGAAGAACATCAACAAGAAAGTGGACTTTCAGAGCGACGCCACAGGCGGAGAAAAAAACGGATTCAAATCTCGTTACTCTCTAGTGGATTACAATCTTGTTCATGAGCTAAAGCAGGAGGACTTGGGGAAAGAGGACTCTGAGAAGAGCGAAGCGACAAAGTGCGAGGCTTTCGATTCTGACTCAGAGGAGAAACACAGAAATCATTTAAAAAGTGATTCTTCAGAGAGGAAACGTACAGAATCGTTGTGCAAAGACACAAAGTACCAGTCAGTCTTTGTTTTATCAGAGGAGAAGGATGAATGTATTATTGCAACCGAGGTGATATTCAGAATGAGCTGGTTCTCAACTGAAGTAAACACAGTGACTGCAGGAAAGGACGTTGGGCCATACTGGCTCGGACTCTCAAAGTTTGTTTCCCAGGAACGTGCCAAGTGGACTCACTGCACTTCCTGTAGGGACGGTTTTACCTCATTGCACTATGATGGGTTTTATTTTTAATGTATTTAACACACATTTGAATCGAATACTGTGTATGCATATGCACTGACTGCAGTGTGTATCTGGAAGTTCTCTGATCATTTCATAGATCAGTAGAGGAAAAACACTGCCATCAGATATGTTTGTTACTGTTTTGGTTTTTGAAAGCTTGTATTTCTTTTATTTAAATGTTATTTGTGATCGATGTGTTTGTGGTTTCTTTTTTCGTGTGTGTGAAGTTTGATGTAATTTAAAATCTTTTTCATTTTGAAAATTTGTCTATTGTAAATAAGGCACTTCGGGTCGATGTGACTTTTCTGATGTAAATGTATTTAAACACGCTGTCAGAATTACAGGAATTGTTTTTATGACTGTTGCCCATGAAAAAAAATCACCGTAATATTTTTCCAAATAAA

Function

symbol description
dld Enables PDZ domain binding activity. Acts upstream of or within several processes, including animal organ development; lateral inhibition; and regulation of hematopoietic stem cell differentiation. Located in perinuclear region of cytoplasm and plasma membrane. Is expressed in several structures, including gut; mesoderm; nervous system; presumptive mesoderm; and tail bud. Orthologous to human DLL1 (delta like canonical Notch ligand 1).
dll1 Enables Notch binding activity and Tat protein binding activity. Involved in Notch signaling pathway; negative regulation of interleukin-10 production; and neuronal stem cell population maintenance. Predicted to be located in adherens junction; apical plasma membrane; and membrane raft. Predicted to be active in plasma membrane. Biomarker of temporal arteritis.

NR:

description
DeltaA

GO:

id name namespace
GO:0021514 ventral spinal cord interneuron differentiation biological_process

KEGG:

id description
K06051 DLL; delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_02761667_02765877.mRNA True 3204 mRNA 0.47 11 2761272 2766340

Neighbor

gene id symbol gene type direction distance location
CI01000005_02669952_02699226 ACTR2B, ACTR2, ACTR2.S, ACTR2A coding downstream 62046 2669114 ~ 2699226 (-)
CI01000005_02619187_02639895 SPRED2B, SPRED2 coding downstream 121377 2618085 ~ 2639895 (-)
CI01000005_02403966_02437498 NA coding downstream 323733 2403955 ~ 2437539 (-)
CI01000005_02312170_02375877 MEIS2, MEIS1 coding downstream 385395 2312170 ~ 2375877 (-)
CI01000005_02240553_02245892 NA coding downstream 514437 2239837 ~ 2246835 (-)
CI01000005_02885300_02890664 NA coding upstream 118590 2884930 ~ 2890664 (-)
CI01000005_02940731_02974087 SYNDIG1 coding upstream 173917 2940257 ~ 2974171 (-)
CI01000005_03044395_03046540 TUBA3E, TUBA3D, TUBA1C, TUBA4, TUBA4L, TUBA8L, TUBA4A, TUBA1A.L coding upstream 278023 3044363 ~ 3046804 (-)
CI01000005_03050086_03051694 TUBA3E, TUBA1C, BRAFLDRAFT_115374, TUBA1A, TUBA4, TUBA4L, TUBA1B, TUBA4A, TUBA1A.L coding upstream 283746 3050086 ~ 3051694 (-)
CI01000005_03163226_03166158 MEA1 coding upstream 395778 3162118 ~ 3166158 (-)
G37730 NA non-coding downstream 2716 2758264 ~ 2758556 (-)
G37729 NA non-coding downstream 4433 2756624 ~ 2756839 (-)
G37723 NA non-coding downstream 19189 2741627 ~ 2742083 (-)
G37691 NA non-coding downstream 154433 2606552 ~ 2606839 (-)
G37690 NA non-coding downstream 156029 2604600 ~ 2605243 (-)
G37755 NA non-coding upstream 24821 2791161 ~ 2791417 (-)
G37739 NA non-coding upstream 79264 2845604 ~ 2881743 (-)
G37742 NA non-coding upstream 100791 2867131 ~ 2875112 (-)
G37798 NA non-coding upstream 140828 2907168 ~ 2907559 (-)
G37799 NA non-coding upstream 151958 2918298 ~ 2918650 (-)
CI01000005_01883894_01899867 NA other downstream 871996 1883222 ~ 1899867 (-)
G36628 NA other downstream 1096993 1663267 ~ 1664279 (-)
G36049 NA other downstream 1717600 1021295 ~ 1043672 (-)
G38510 NA other upstream 1438505 4204845 ~ 4206208 (-)
G38415 NA other upstream 1614898 4381238 ~ 4401110 (-)
G39515 NA other upstream 3067452 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 3714349 6481355 ~ 6483265 (-)
G40487 NA other upstream 4429455 7195795 ~ 7196428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006410 dld coding NC_007124.7 CM002897.2 6075572 ~ 6081803 (-)
bowfin (Amia calva) AMCG00001529 LOC107717858 coding CM030143.1 CM030143.1 6937347 ~ 6943146 (+)