CI01000005_03044395_03046540 (TUBA3E, TUBA3D, TUBA1C, TUBA4, TUBA4L, TUBA8L, TUBA4A, TUBA1A.L)


Basic Information

Item Value
gene id CI01000005_03044395_03046540
gene name TUBA3E, TUBA3D, TUBA1C, TUBA4, TUBA4L, TUBA8L, TUBA4A, TUBA1A.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3044363 ~ 3046804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_03044395_03046540.mRNA
TGTGGAGGTGAGGTGATTTCTTTTAGAAAGGCAACAGTTAATAACTTTTGGAAGCTTAGTTTGTGTTTTATATTTCCAGGATTTAAAGGCTCTGTATTAGTTCCTACTTGCTCTGATACTTGAGCACAATGGTGAGTTTATTGATTGTCATCTTCACTATGGTACTGTTTAACCACTTCACTGCAGTCATGATTGTGTTTGTGCTTGTTTTGGTCAAACCAGAGGGAGTGCATCTCCATACATATTGGTCAAGCAGGTATCCAGATGGGTAACTCTTGCTGGGAGTTGTATTGTTTGGAGCATGGCTTCCAGCCAGATGGGACCATCCTTAATGATGGAAGCTCATTGGTTGACTCTTCTTTTGGCACTTTCTTCAGTGAAACTGGTGCTGGGAAGTATGTTCCTCGTGCAGTGTTTATTGATCTGGAGCCGACAGTTGTTGATGAGATCCGTAACGGACACTATCGACAGCTGTACCACCCTGAGCAGCTCATCAGTGGCAAGGAGGATGCTGCCAATAATTATGCTCGTGGTCACTATACCATTGGCAAAGAGATTGTAGACTCCGTGCTTGACCGGATGCGCAAAATGGCGGACCAGTGCACCGGTCTGCAGGGGTTCCTGATCTTCCACAGTTTTGGTGGAGGAACAGGCTCTGGTTTCTCATCTCTGCTGATGGAGCGATTGTCTGTCGATTACGGTAAAAAGTCAAAGTTGGAGTTTTCTGTGTATCCTGCCCCACAAGTCAGCACAGCTGTGGTTGAGCCCTACAACTCGATCCTTACGACCCACACCACTCTCGAGCACTCGGACTGCTCCTTCATGGTGGATAACGAAGCCATCTTTGACATCTGTAAGCGGAACCTCGATATCGAGCGTCCCTCATACACTAACCTGAACAGGCTCATCGCCCAGATTGTGTCCTCCATTACGGCGTCACTGCGCTTTGACGGTGCGCTAAACGTCGACCTCACGGAGTTCCAGACCAACCTGGTCCCGTACCCTCGCATTCACTTTCCATTGGTCACCTACTCCCCCATCATTTCGGCCGAAAAGGCCTACCATGAGCAGCTCTCCGTACCGGAGATCACCAATGCCTGCTTCGAGCCAGCAAACCAGATGGTGAAGTGTGACCCTCGCCGTGGAAAATACATGGCCTGCTGTTTGCTGTACCGTGGTGATGTGGTTCCGAAAGATGTCAACGGCGCCATAGCCAACATCAAGACGAGGCGCTCCATCCAGTTTGTAGACTGGTGTCCAACTGGTTTTAAGGTGGGAATCAACTACCAGCCACCCACCGTCGTGCCAGGAGGGGATCTGGCCAAAGTGCAGAGAGCTGTCTGCATGCTAAGCAACACCACTGCCATCGCAGAAGCATGGGGCCGCCTGGACCACAAGTTTGACCTGATGTATGCGAAGAGGGCTTTTGTTCACTGGTACGTGGGTGAAGGGATGGAGGAAGGGGAGTTCTCGGAGGCTCGGGAAGACATGGCTGCCCTGGAGAAAGACTACGAGGAGGTTGGTGCTGATTCCACTGAGGACTGTGGGGAGGATGAAGAAGAATATTGAAGATGATAAATGTACTTATTTGAGTAAATAAA

Function

symbol description
tuba4l Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBAL3 (tubulin alpha like 3).
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).
tuba4a Enables protein kinase binding activity. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Located in microtubule. Implicated in amyotrophic lateral sclerosis type 22.
tuba3e Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Located in microtubule cytoskeleton.
tuba3d Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Located in nucleus. Implicated in keratoconus.

NR:

description
Tubulin, alpha 4 like

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_03044395_03046540.mRNA True 1601 mRNA 0.50 3 3044363 3046804

Neighbor

gene id symbol gene type direction distance location
CI01000005_02940731_02974087 SYNDIG1 coding downstream 70192 2940257 ~ 2974171 (-)
CI01000005_02885300_02890664 NA coding downstream 153699 2884930 ~ 2890664 (-)
CI01000005_02761667_02765877 DLL1, DLD coding downstream 278023 2761272 ~ 2766340 (-)
CI01000005_02669952_02699226 ACTR2B, ACTR2, ACTR2.S, ACTR2A coding downstream 345137 2669114 ~ 2699226 (-)
CI01000005_02619187_02639895 SPRED2B, SPRED2 coding downstream 404468 2618085 ~ 2639895 (-)
CI01000005_03050086_03051694 TUBA3E, TUBA1C, BRAFLDRAFT_115374, TUBA1A, TUBA4, TUBA4L, TUBA1B, TUBA4A, TUBA1A.L coding upstream 3282 3050086 ~ 3051694 (-)
CI01000005_03163226_03166158 MEA1 coding upstream 115314 3162118 ~ 3166158 (-)
CI01000005_03175712_03183326 NA coding upstream 128778 3175582 ~ 3183326 (-)
CI01000005_03384625_03397017 LRRC73 coding upstream 337546 3384350 ~ 3397017 (-)
CI01000005_03400313_03405169 NA coding upstream 353490 3400294 ~ 3405169 (-)
G37815 NA non-coding downstream 32419 3009599 ~ 3011944 (-)
G37799 NA non-coding downstream 125713 2918298 ~ 2918650 (-)
G37798 NA non-coding downstream 136804 2907168 ~ 2907559 (-)
G37739 NA non-coding downstream 162620 2845604 ~ 2881743 (-)
G37861 NA non-coding upstream 44228 3091032 ~ 3091255 (-)
G37867 NA non-coding upstream 70490 3117294 ~ 3144925 (-)
G37904 NA non-coding upstream 188608 3235412 ~ 3236020 (-)
G37906 NA non-coding upstream 196834 3243638 ~ 3243856 (-)
G37936 NA non-coding upstream 238336 3285140 ~ 3285803 (-)
CI01000005_01883894_01899867 NA other downstream 1155087 1883222 ~ 1899867 (-)
G36628 NA other downstream 1380084 1663267 ~ 1664279 (-)
G36049 NA other downstream 2000691 1021295 ~ 1043672 (-)
G38510 NA other upstream 1158041 4204845 ~ 4206208 (-)
G38415 NA other upstream 1334434 4381238 ~ 4401110 (-)
G39515 NA other upstream 2786988 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 3433885 6481355 ~ 6483265 (-)
G40487 NA other upstream 4148991 7195795 ~ 7196428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G339053 tuba4l,LOC108437766,LOC108256914,LOC107706828,LOC107564211 unknown NW_019172937.1 APWO02000146.1 390891 ~ 393815 (-)