G37867


Basic Information

Item Value
gene id G37867
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3117294 ~ 3144925 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU42954
GACCACGTCGCGGTTGTGTGTGATGTACTCCACCATTTCATTAAGGCCGGCTCTCTTCACCTCCTTGTACTTGAGATCACTAAGTGGATCAGTCACAAAGTCAAAAAGCACACAGCACTGCCGCAGTTTCTGGACAAACAGTTCTTCTCGATCAATGGGTGGGGCATCTTTGAGGGCGGGAAGCTTCTGCAGTTCCCGGTTCTTGCTGAGGTTGAATCGTGATGAACTCTGTCGACGCTCCTTCTTTACAATCTGTGGCCCACCTGAGTACTTAATTTTGTTGAGCTGAGTGGGAGGTGGAGTGCTGTTGCTCGGACGCTTGCTGGCTGTCTGCTGGGCCTCTTCTGAATTTTCCGTTCCAGCATCCTTCCCGCCACCGGCGTTACTGTTTTTTGTGCTGCTTTTTGCAGATTTGGTTGGTTCCTTCTCTTTTTTAGTTTTATTCGGCATTTTGCAAATGTTGTCTTTAGCCGTGCCTCCGTGATAAGGCTTCCCTTGCACTCGGGCTCTCGCGCACACTGTTACCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU42954 True 527 lncRNA 0.50 4 3117294 3144925

Neighbor

gene id symbol gene type direction distance location
CI01000005_03050086_03051694 TUBA3E, TUBA1C, BRAFLDRAFT_115374, TUBA1A, TUBA4, TUBA4L, TUBA1B, TUBA4A, TUBA1A.L coding downstream 65600 3050086 ~ 3051694 (-)
CI01000005_03044395_03046540 TUBA3E, TUBA3D, TUBA1C, TUBA4, TUBA4L, TUBA8L, TUBA4A, TUBA1A.L coding downstream 70490 3044363 ~ 3046804 (-)
CI01000005_02940731_02974087 SYNDIG1 coding downstream 143123 2940257 ~ 2974171 (-)
CI01000005_02885300_02890664 NA coding downstream 226630 2884930 ~ 2890664 (-)
CI01000005_02761667_02765877 DLL1, DLD coding downstream 350954 2761272 ~ 2766340 (-)
CI01000005_03163226_03166158 MEA1 coding upstream 17193 3162118 ~ 3166158 (-)
CI01000005_03175712_03183326 NA coding upstream 30657 3175582 ~ 3183326 (-)
CI01000005_03384625_03397017 LRRC73 coding upstream 239425 3384350 ~ 3397017 (-)
CI01000005_03400313_03405169 NA coding upstream 255369 3400294 ~ 3405169 (-)
CI01000005_03412228_03417948 YIPF3, YIPF3.L coding upstream 267078 3412003 ~ 3418657 (-)
G37861 NA non-coding downstream 26039 3091032 ~ 3091255 (-)
G37815 NA non-coding downstream 105350 3009599 ~ 3011944 (-)
G37799 NA non-coding downstream 198644 2918298 ~ 2918650 (-)
G37798 NA non-coding downstream 209735 2907168 ~ 2907559 (-)
G37904 NA non-coding upstream 90487 3235412 ~ 3236020 (-)
G37906 NA non-coding upstream 98713 3243638 ~ 3243856 (-)
G37936 NA non-coding upstream 140215 3285140 ~ 3285803 (-)
G37908 NA non-coding upstream 178329 3323254 ~ 3427865 (-)
G37999 NA non-coding upstream 313009 3457934 ~ 3458204 (-)
CI01000005_01883894_01899867 NA other downstream 1228018 1883222 ~ 1899867 (-)
G36628 NA other downstream 1453015 1663267 ~ 1664279 (-)
G36049 NA other downstream 2073622 1021295 ~ 1043672 (-)
G38510 NA other upstream 1059920 4204845 ~ 4206208 (-)
G38415 NA other upstream 1236313 4381238 ~ 4401110 (-)
G39515 NA other upstream 2688867 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 3335764 6481355 ~ 6483265 (-)
G40487 NA other upstream 4050870 7195795 ~ 7196428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006385 ppp2r5d coding NC_007124.7 CM002897.2 4232568 ~ 4303641 (-)