G37908


Basic Information

Item Value
gene id G37908
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3323254 ~ 3427865 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU42999
ATGACAAAAGGGTAAGAAGACTATGACAACATATCAGCCTCACCTGTGCATTGGCCCGCTTTCGTAAAAGCCATTTGTCCTCCTCAAGGTCTTTTGTGTTCTCGCTGTCTGGCTTGTTTGGCGTCTCAGTGGTACTGCTAATGTGCTTCTTTGCTGGCAGAAGCCAGTTCTCCGACTGCAAAGGCTTCTGGATGGAGCTCTCAGAGTCTGAGGTTTTGATGTGCGGGGTCACCCAGGCAGAGAGGGATGAAAGGTCAGGAGACTTTGCACTGTTGCTTGGGTGCAGCCAGGCCTCTAAGATGGCCTGAACCTTCTGCTGCTGGTGGCTGGAGGCTTTGTTTGTGGCATTCTTATTGACGGGAACCCCATTCTTATCTCGACCCTCTTTCTTGAGGAGCCAAGCACTGAGGGCCTCTTTTCCACAGTTGTCGTCACAGACACATTGAGCGTAGCTGGCACAGGTCTCATTGGCTTTGCAGGTGGTCTCAAGAGGGATGGTCTTGTGAAGCCACATCTCGATGGGATCGGAGCTGGTGTTTGGAGTGCTGGCAGGGGATGAAGGGGGAGTCTTTAGGCACTTGAGCTTTCCGAGGTTCTCGATTTCCACAGCCGTGGTGCGTGTGGCACAGCAAGAACTGCAGTCAGACTTTGAGAGCCAATCGCTGTTAGAAAAGCTCTCGTAGAAGGGTTTGATGATCAGATTGAAGCGGTCAGCATCTGATACTTGGCTGGTCTTATCTTGCTTGATTGTGCTTGGCCTGGCAAGCCACTTGCTGAGTTCTTCCTCCTCAAAAGTGTCGTCCACTTTTTCCTGCTGGTCTTCTAGTTCCACCTCATCCAGATTTAAGTCGCTTTCATCAATCATCTCAATCGAGAAGGTTGAGCTGCCGCTGCTGGTTCGCTCACGATTAGGCAATTTCTCCTTTATTAGCCATGACTCCAGGTCATGAAGCTGGCCCCAAGCTTTAAGGAAGTCAAAGGCAGGTAGTTGTTGCTCTTCCTGTATGGTAAAAAAAAAAAAAAAAAAAACTTTTGAATGTTATAGTGTGCATTTAAATATAAAACTTCAGTTCTTGATGTTCTTGAAAACATAGTTCTTGAAGAACTATGAGTAGTCAAATAGTCAAAAACATTAGTCAATGTTTTGGTCTGTGTCAAATAGTCTTGATCACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU42999 True 1173 lncRNA 0.47 2 3323254 3427865

Neighbor

gene id symbol gene type direction distance location
CI01000005_03175712_03183326 NA coding downstream 139928 3175582 ~ 3183326 (-)
CI01000005_03163226_03166158 MEA1 coding downstream 157096 3162118 ~ 3166158 (-)
CI01000005_03050086_03051694 TUBA3E, TUBA1C, BRAFLDRAFT_115374, TUBA1A, TUBA4, TUBA4L, TUBA1B, TUBA4A, TUBA1A.L coding downstream 271560 3050086 ~ 3051694 (-)
CI01000005_03044395_03046540 TUBA3E, TUBA3D, TUBA1C, TUBA4, TUBA4L, TUBA8L, TUBA4A, TUBA1A.L coding downstream 276450 3044363 ~ 3046804 (-)
CI01000005_02940731_02974087 SYNDIG1 coding downstream 349083 2940257 ~ 2974171 (-)
CI01000005_03439939_03442430 NA coding upstream 12074 3439939 ~ 3443193 (-)
CI01000005_03494256_03497235 QKI coding upstream 66212 3494077 ~ 3499017 (-)
CI01000005_03530548_03573901 NA coding upstream 102384 3530249 ~ 3574781 (-)
CI01000005_03714714_03715575 NA coding upstream 286408 3714273 ~ 3715641 (-)
CI01000005_03986570_03989555 PRPH2B coding upstream 558234 3986099 ~ 3989555 (-)
G37936 NA non-coding downstream 37451 3285140 ~ 3285803 (-)
G37906 NA non-coding downstream 79398 3243638 ~ 3243856 (-)
G37904 NA non-coding downstream 87234 3235412 ~ 3236020 (-)
G37867 NA non-coding downstream 178329 3117294 ~ 3144925 (-)
G37861 NA non-coding downstream 231999 3091032 ~ 3091255 (-)
G37999 NA non-coding upstream 30069 3457934 ~ 3458204 (-)
G38001 NA non-coding upstream 31706 3459571 ~ 3459807 (-)
G38002 NA non-coding upstream 32255 3460120 ~ 3460709 (-)
G38005 NA non-coding upstream 39816 3467681 ~ 3468154 (-)
G37913 NA non-coding upstream 48212 3476077 ~ 3520028 (-)
CI01000005_01883894_01899867 NA other downstream 1433978 1883222 ~ 1899867 (-)
G36628 NA other downstream 1658975 1663267 ~ 1664279 (-)
G36049 NA other downstream 2279582 1021295 ~ 1043672 (-)
G38510 NA other upstream 776980 4204845 ~ 4206208 (-)
G38415 NA other upstream 953373 4381238 ~ 4401110 (-)
G39515 NA other upstream 2405927 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 3052824 6481355 ~ 6483265 (-)
G40487 NA other upstream 3767930 7195795 ~ 7196428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 misc NC_056711.1 CM032080.1 3422753 ~ 3435580 (-)