G40487


Basic Information

Item Value
gene id G40487
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7195795 ~ 7196428 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU45920
GAAGTGGTAGGCCACGTAAAATCACAGAGCGGGGTCAGCGCATGCTGAGGCGCACAGTGTGCAGAAGTCGCCAACTTTCTGCAGAGTCAATAGCTACAGACCTCCAAACTTCATGTGGCCTTCAGATTAGCTCAAGAACAGTGCGCAGAGAGCTTCATGGAATGGGTTTCCATGGCCGAGCAGCTGCATCCAAGCCTTACATCACCAAGTGCAATGAAATTTTGGACAATTTCATGCTCCCAACTTTGTGGGAACAGTTTGGGGATGGCCCCTTCCTGTTCCAACATGACTGCGCACCAGTGAACACAGCAAGGTCCATAAAGACATGGATGAGCGAGTTTGGTGTGGAGGAACTTGACTGGCCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU45920 True 366 TUCP 0.51 2 7195795 7196428

Neighbor

gene id symbol gene type direction distance location
CI01000005_07143500_07144465 NA coding downstream 51230 7143482 ~ 7144565 (-)
CI01000005_07111233_07112234 NA coding downstream 83529 7110722 ~ 7112266 (-)
CI01000005_07093538_07094533 NA coding downstream 101226 7093482 ~ 7094569 (-)
CI01000005_07052874_07068345 NA coding downstream 127418 7052730 ~ 7068377 (-)
CI01000005_07035672_07037203 NA coding downstream 158519 7034777 ~ 7037276 (-)
CI01000005_07355833_07360372 NA coding upstream 159405 7355833 ~ 7360372 (-)
CI01000005_07373961_07374634 NA coding upstream 176982 7373410 ~ 7374634 (-)
CI01000005_07398684_07399164 MPC1.S, MPC1, MPC1.L coding upstream 202059 7398487 ~ 7399164 (-)
CI01000005_07436839_07437813 NA coding upstream 239637 7436065 ~ 7438424 (-)
CI01000005_07591912_07592984 NA coding upstream 395484 7591912 ~ 7592991 (-)
G40472 NA non-coding downstream 40180 7155361 ~ 7155615 (-)
G40403 NA non-coding downstream 104901 6993317 ~ 7090894 (-)
G40402 NA non-coding downstream 130495 7060587 ~ 7065300 (-)
G40408 NA non-coding downstream 195923 6999253 ~ 6999872 (-)
G40407 NA non-coding downstream 197452 6997582 ~ 6998343 (-)
G40497 NA non-coding upstream 23583 7220011 ~ 7220359 (-)
G40499 NA non-coding upstream 26179 7222607 ~ 7222893 (-)
G40503 NA non-coding upstream 35178 7231606 ~ 7231852 (-)
G40518 NA non-coding upstream 87293 7283721 ~ 7284935 (-)
G40520 NA non-coding upstream 88886 7285314 ~ 7287242 (-)
CI01000005_06481721_06483251 NA other downstream 712306 6481355 ~ 6483265 (-)
G39515 NA other downstream 1361256 5833792 ~ 5834539 (-)
G38415 NA other downstream 2794685 4381238 ~ 4401110 (-)
G38510 NA other downstream 2989587 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 5306519 1883222 ~ 1899867 (-)
G40540 NA other upstream 329793 7526221 ~ 7532148 (-)

Expression


Co-expression Network